ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__PLACEHOLDER__15 (TPF updated: 2013-07-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH17-248C21
HSCHR15_PLACEHOLDER_CTG4
bMO248C21
AC243653.3
finished
  GAP (type-2) length unknown    
3 CH17-220P3
HSCHR15_PLACEHOLDER_CTG4
bMO220P3
AC243660.3
finished
4 CH17-184J24
HSCHR15_PLACEHOLDER_CTG4
bMO184J24
AC243913.2
finished
5 CH17-71L23
HSCHR15_PLACEHOLDER_CTG4
bMO71L23
AC243951.3
finished
6 CH17-169A12
HSCHR15_PLACEHOLDER_CTG4
bMO169A12
AC243657.2
finished
  GAP (type-2) length unknown    
8 CH17-215I18
HSCHR15_PLACEHOLDER_CTG4
bMO215I18
AC243901.3
finished
9 CH17-5C18
HSCHR15_PLACEHOLDER_CTG4
bMO5C18
AC243902.3
finished
10 CH17-245F8
HSCHR15_PLACEHOLDER_CTG4
bMO245F8
AC243686.3
finished
11 CH17-248A6
HSCHR15_PLACEHOLDER_CTG4
bMO248A6
AC243652.4
finished
12 CH17-141A19
HSCHR15_PLACEHOLDER_CTG4
bMO141A19
AC243587.3
finished
13 CH17-465I15
HSCHR15_PLACEHOLDER_CTG4
bMO465I15
AC244165.2
finished
14 CH17-455O19
HSCHR15_PLACEHOLDER_CTG4
bMO455O19
AC243949.2
finished
15 CH17-339B3
HSCHR15_PLACEHOLDER_CTG4
bMO339B3
AC243790.3
finished
16 CH17-267D1
HSCHR15_PLACEHOLDER_CTG4
bMO267D1
AC243679.3
finished
  GAP (type-2) length unknown    
18 CH17-250J22
HSCHR15_PLACEHOLDER_CTG4
bMO250J22
AC243687.3
finished
19 CH17-6K7
HSCHR15_PLACEHOLDER_CTG4
bMO6K7
AC244012.2
finished
20 CH17-404C3
HSCHR15_PLACEHOLDER_CTG4
bMO404C3
AC243758.2
finished
21 CH17-10D14
HSCHR15_PLACEHOLDER_CTG4
bMO10D14
AC243586.3
finished
22 CH17-151A19
HSCHR15_PLACEHOLDER_CTG4
bMO151A19
AC243650.3
finished
23 CH17-287M11
HSCHR15_PLACEHOLDER_CTG4
bMO287M11
AC243688.3
finished
24 CH17-406C17
HSCHR15_PLACEHOLDER_CTG4
bMO406C17
AC243759.3
finished
25 CH17-245I8
HSCHR15_PLACEHOLDER_CTG4
bMO245I8
AC243649.4
finished
26 CH17-331I9
HSCHR15_PLACEHOLDER_CTG4
bMO331I9
AC243734.3
finished
27 CH17-50J22
HSCHR15_PLACEHOLDER_CTG4
bMO50J22
AC243827.3
finished
  GAP (type-2) length unknown    
29 CH17-280K8
HSCHR15_PLACEHOLDER_CTG4
bMO280K8
AC243655.3
finished
30 CH17-325P22
HSCHR15_PLACEHOLDER_CTG4
bMO325P22
AC243948.1
finished
  GAP (type-3) length unknown    
32 CH17-365J6
HSCHR15_PLACEHOLDER_CTG8
bMO365J6
AC246818.2
finished
33 CH17-264B12
HSCHR15_PLACEHOLDER_CTG8
bMO264B12
EPN details
AC244668.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 226751 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC243653.3 1 226751 +
226752 276751 2 N 50000 contig yes
276752 474005 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC243660.3 1 197254 -
474006 680501 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC243913.2 1 206496 -
680502 785381 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC243951.3 1 104880 -
785382 870138 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 AC243657.2 122707 207463 +
870139 920138 7 N 50000 contig yes
920139 1132881 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 16 AC243901.3 1 212743 -
1132882 1313660 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 16 AC243902.3 1 180779 -
1313661 1495294 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 16 AC243686.3 34966 216599 +
1495295 1655128 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 16 AC243652.4 45976 205809 +
1655129 1822352 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 16 AC243587.3 50260 217483 +
1822353 2007119 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 16 AC244165.2 21501 206267 +
2007120 2142229 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 16 AC243949.2 1 135110 -
2142230 2291551 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 16 AC243790.3 1 149322 -
2291552 2483647 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 16 AC243679.3 1 192096 -
2483648 2533647 17 N 50000 contig yes
2533648 2753494 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC243687.3 1 219847 +
2753495 2894783 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC244012.2 1 141289 -
2894784 3099268 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC243758.2 1 204485 -
3099269 3289712 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC243586.3 1 190444 -
3289713 3444577 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC243650.3 84236 239100 +
3444578 3648160 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC243688.3 1 203583 -
3648161 3827376 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC243759.3 14039 193254 +
3827377 3979779 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC243649.4 1 152403 -
3979780 4147133 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC243734.3 1 167354 -
4147134 4344474 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 27 AC243827.3 1 197341 -
4344475 4394474 28 N 50000 contig yes
4394475 4605734 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 AC243655.3 1 211260 +
4605735 4788744 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 AC243948.1 1 183010 -
4788745 4838744 31 N 50000 contig no
4838745 5027345 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 33 AC246818.2 1 188601 +
5027346 5072054 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 33 AC244668.2 27772 72480 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH17-248C21
HSCHR15_PLACEHOLDER_CTG4
bMO248C21
-
-
AC243653.3
finished
226751 CHORI-17        
  GAP (type-2) length unknown                  
3 CH17-220P3
HSCHR15_PLACEHOLDER_CTG4
bMO220P3
-
-
AC243660.3
finished
197254 CHORI-17 5' / 3'
1 / 206496
- / -
4079
0.05
Identified
2014-07-28
fetch_ncbi...
humpub
 
4 CH17-184J24
HSCHR15_PLACEHOLDER_CTG4
bMO184J24
-
-
AC243913.2
finished
210575 CHORI-17 5' / 3'
1 / 104880
- / -
103048
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
5 CH17-71L23
HSCHR15_PLACEHOLDER_CTG4
bMO71L23
-
-
AC243951.3
finished
207928 CHORI-17 5' / 5'
1 / 122707
- / -
122706
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
6 CH17-169A12
HSCHR15_PLACEHOLDER_CTG4
bMO169A12
-
-
AC243657.2
finished
207463 CHORI-17        
  GAP (type-2) length unknown                  
8 CH17-215I18
HSCHR15_PLACEHOLDER_CTG4
bMO215I18
-
-
AC243901.3
finished
212743 CHORI-17 5' / 3'
1 / 180779
- / -
60515
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
9 CH17-5C18
HSCHR15_PLACEHOLDER_CTG4
bMO5C18
-
-
AC243902.3
finished
241294 CHORI-17 5' / 5'
1 / 34966
- / -
34962
0.72
Identified
2014-07-28
fetch_ncbi...
humpub
Certificate submitted, not yet approved
10 CH17-245F8
HSCHR15_PLACEHOLDER_CTG4
bMO245F8
-
-
AC243686.3
finished
216599 CHORI-17 3' / 5'
216599 / 45976
- / -
45975
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
11 CH17-248A6
HSCHR15_PLACEHOLDER_CTG4
bMO248A6
-
-
AC243652.4
finished
205809 CHORI-17 3' / 5'
205809 / 50260
- / -
50259
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
12 CH17-141A19
HSCHR15_PLACEHOLDER_CTG4
bMO141A19
-
-
AC243587.3
finished
217483 CHORI-17 3' / 5'
217483 / 21501
- / -
21500
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
13 CH17-465I15
HSCHR15_PLACEHOLDER_CTG4
bMO465I15
-
-
AC244165.2
finished
206267 CHORI-17 3' / 3'
206267 / 135110
- / -
61694
2.8
Identified
2014-07-28
fetch_ncbi...
humpub
Certificate submitted, not yet approved
14 CH17-455O19
HSCHR15_PLACEHOLDER_CTG4
bMO455O19
-
-
AC243949.2
finished
196830 CHORI-17 5' / 3'
1 / 149322
- / -
56244
0.02
Identified
2014-07-28
fetch_ncbi...
humpub
 
15 CH17-339B3
HSCHR15_PLACEHOLDER_CTG4
bMO339B3
-
-
AC243790.3
finished
205570 CHORI-17 5' / 3'
1 / 192096
- / -
29815
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
16 CH17-267D1
HSCHR15_PLACEHOLDER_CTG4
bMO267D1
-
-
AC243679.3
finished
221911 CHORI-17        
  GAP (type-2) length unknown                  
18 CH17-250J22
HSCHR15_PLACEHOLDER_CTG4
bMO250J22
-
-
AC243687.3
finished
219847 CHORI-17 3' / 3'
219847 / 141289
- / -
55699
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
19 CH17-6K7
HSCHR15_PLACEHOLDER_CTG4
bMO6K7
-
-
AC244012.2
finished
196989 CHORI-17 5' / 3'
1 / 204485
- / -
3953
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
20 CH17-404C3
HSCHR15_PLACEHOLDER_CTG4
bMO404C3
-
-
AC243758.2
finished
208438 CHORI-17 5' / 3'
1 / 190444
- / -
30782
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
21 CH17-10D14
HSCHR15_PLACEHOLDER_CTG4
bMO10D14
-
-
AC243586.3
finished
221226 CHORI-17 5' / 5'
1 / 84236
- / -
84235
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
22 CH17-151A19
HSCHR15_PLACEHOLDER_CTG4
bMO151A19
-
-
AC243650.3
finished
239100 CHORI-17 3' / 3'
239100 / 203583
- / -
27760
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
23 CH17-287M11
HSCHR15_PLACEHOLDER_CTG4
bMO287M11
-
-
AC243688.3
finished
231344 CHORI-17 5' / 5'
1 / 14039
- / -
14038
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
24 CH17-406C17
HSCHR15_PLACEHOLDER_CTG4
bMO406C17
-
-
AC243759.3
finished
193254 CHORI-17 3' / 3'
193254 / 152403
- / -
69763
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
25 CH17-245I8
HSCHR15_PLACEHOLDER_CTG4
bMO245I8
-
-
AC243649.4
finished
222166 CHORI-17 5' / 3'
1 / 167354
- / -
42520
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
26 CH17-331I9
HSCHR15_PLACEHOLDER_CTG4
bMO331I9
-
-
AC243734.3
finished
209874 CHORI-17 5' / 3'
1 / 197341
- / -
21619
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
27 CH17-50J22
HSCHR15_PLACEHOLDER_CTG4
bMO50J22
-
-
AC243827.3
finished
218960 CHORI-17        
  GAP (type-2) length unknown                  
29 CH17-280K8
HSCHR15_PLACEHOLDER_CTG4
bMO280K8
-
-
AC243655.3
finished
211260 CHORI-17 3' / 3'
211260 / 183010
- / -
29495
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
30 CH17-325P22
HSCHR15_PLACEHOLDER_CTG4
bMO325P22
-
-
AC243948.1
finished
212505 CHORI-17        
  GAP (type-3) length unknown                  
32 CH17-365J6
HSCHR15_PLACEHOLDER_CTG8
bMO365J6
-
-
AC246818.2
finished
188601 CHORI-17 3' / 5'
188601 / 27772
- / -
27771
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
33 CH17-264B12
HSCHR15_PLACEHOLDER_CTG8
bMO264B12
EPN details
Externally Finished
14-AUG-12
AC244668.2
finished
72480 CHORI-17        

Statistics

Clone Summary

Number of gaps
5
Gap types
type-2
4
type-3
1
Total clones
28
Clone HTGS Phases
finished
28
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
998,432
Total finished length of fin clones w/ overlap
5,820,521
Total finished length of fin clones w/o overlap
4,822,089
Total overlap length of fin+unfin clones
998,432
Total finished length of fin+unfin clones w/ overlap
5,820,521
Total finished length of fin+unfin clones w/o overlap
4,822,089

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Other links

* quick link - http://q.sanger.ac.uk/al6olm6h