ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_5__3 (TPF updated: 2014-09-03)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-141C7
HSCHR3_6_CTG3
bA141C7
AC233280.2
finished
2 ABC7-43045300N15
HSCHR3_6_CTG3
f7A43045300N15
AC237047.3
finished
3 RP11-171N2
HSCHR3_6_CTG3
bA171N2
AC069513.28
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 136598 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC233280.2 30363 166960 -
136599 173136 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC237047.3 1 36538 -
173137 199079 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC069513.28 1 25943 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-141C7
HSCHR3_6_CTG3
bA141C7
-
-
AC233280.2
finished
166960 RPCI-11.1 5' / 3'
30363 / 36538
- / -
28945
12.49
Identified
2014-09-03
fetch_ncbi...
humpub
Certificate submitted, not yet approved
2 ABC7-43045300N15
HSCHR3_6_CTG3
f7A43045300N15
-
-
AC237047.3
finished
36538 ABC7 5' / 3'
1 / 25943
- / 112252
35377
8.76
Identified
2014-09-03
fetch_ncbi...
humpub
Certificate approved
3 RP11-171N2
HSCHR3_6_CTG3
bA171N2
-
-
AC069513.28
finished
174097 RPCI-11.1        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
64,322
Total finished length of fin clones w/ overlap
377,595
Total finished length of fin clones w/o overlap
313,273
Total overlap length of fin+unfin clones
64,322
Total finished length of fin+unfin clones w/ overlap
377,595
Total finished length of fin+unfin clones w/o overlap
313,273

Dovetails

# rank accession status length date
1 3 AC069513.28 unfinished 112,252 Tue, 02 Sep 2014 23:41

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