ChromoView - clone / Assembly sequencing status

B.taurus: Sub region MHC_hap2 (TPF updated: 2013-07-05)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH240-350N7
ctg_11_mhc_class_IIa
bBT350N7
FO681516.1
finished
2 CH240-172H15
ctg_11_mhc_class_IIa
bBT172H15
FQ482098.2
finished
3 CH240-110I6
ctg_11_mhc_class_IIa
bBT110I6
FQ482090.5
finished
4 CH240-126O4
ctg_11_mhc_class_IIa
bBT126O4
FQ482091.6
finished
5 CH240-414K14
ctg_11_mhc_class_IIa
bBT414K14
FQ790216.2
finished
6 CH240-131G8
ctg_11_mhc_class_IIa
bBT131G8
FQ482092.6
finished
7 CH240-145K3
ctg_11_mhc_class_IIa
bBT145K3
FQ482094.3
finished
8 CH240-227K23
ctg_11_mhc_class_IIa
bBT227K23
FQ482101.2
finished
9 CH240-364F20
ctg_11_mhc_class_IIa
bBT364F20
FQ482113.1
finished
  GAP (type-3) length 150000 bps    
11 CH240-224M22
ctg_21_mhc_class_III
bBT224M22
FQ482100.2
contiguous
12 CH240-5B21
ctg_21_mhc_class_III
bBT5B21
FQ482132.2
unfinished
13 CH240-250C15
ctg_21_mhc_class_III
bBT250C15
FQ482104.1
contiguous
  GAP (type-3) length 150000 bps    
15 CH240-127A16
ctg_31_mhc_class_I
bBT127A16
FO538764.1
finished
16 CH240-22F10
ctg_31_mhc_class_I
bBT22F10
FQ482102.7
unfinished
17 CH240-470G19
ctg_31_mhc_class_I
bBT470G19
FQ482123.4
unfinished
18 CH240-165G21
ctg_31_mhc_class_I
bBT165G21
FO681493.1
finished
  GAP (type-3) length 150000 bps    
20 CH240-405I18
ctg_41_mhc_class_I
bBT405I18
FO393397.2
finished
21 CH240-216F21
ctg_41_mhc_class_I
bBT216F21
FQ482099.6
contiguous
22 CH240-165A9
ctg_41_mhc_class_I
bBT165A9
FQ482095.2
finished
23 CH240-100M12
ctg_41_mhc_class_I
bBT100M12
FQ482088.3
unfinished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 98878 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 FO681516.1 1 98878 +
98879 316767 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 FQ482098.2 1 217889 +
316768 374024 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 FQ482090.5 8916 66172 +
374025 603267 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 FQ482091.6 2001 231243 +
603268 619264 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 FQ790216.2 2001 17997 +
619265 624264 6 N 5000 No overlap in database    
624265 677737 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 FQ482092.6 1 53473 +
677738 762552 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 FQ482094.3 2001 86815 +
762553 767552 9 N 5000 No overlap in database    
767553 779352 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 FQ482101.2 1 11800 +
779353 953178 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 FQ482113.1 1 173826 +
953179 1103178 12 N 150000 contig no
1103179 1287016 13 A FQ482100.2 1 183838 +
1287017 1337016 14 N 50000 clone yes
1337017 1487219 15 A FQ482104.1 1 150203 +
1487220 1637219 16 N 150000 contig no
1637220 1717488 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 FO538764.1 1 80269 +
1717489 1767488 18 N 50000 clone yes
1767489 1817488 19 N 50000 clone yes
1817489 2030087 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 FO681493.1 1 212599 +
2030088 2180087 21 N 150000 contig no
2180088 2358010 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 FO393397.2 1 177923 +
2358011 2395785 23 A FQ482099.6 173916 211690 +
2395786 2400785 24 N 5000 No overlap in database    
2400786 2455902 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 FQ482095.2 1 55117 +
2455903 2505902 26 N 50000 clone no

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
20
Clone HTGS Phases
contiguous
3
finished
13
unfinished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
129,348
Total finished length of fin clones w/ overlap
1,598,295
Total finished length of fin clones w/o overlap
1,468,947
Total overlap length of fin+unfin clones
546,072
Total finished length of fin+unfin clones w/ overlap
2,922,405
Total finished length of fin+unfin clones w/o overlap
2,376,333

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Other links

* quick link - http://q.sanger.ac.uk/ylrwobk4