ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__PLACEHOLDER__8 (TPF updated: 2013-07-22)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH17-462D8
HG1339
bMO462D8
AC245594.2
finished
2 CH17-247K4
HG1339
bMO247K4
AC245062.2
finished
3 CH17-31O1
HG1339
bMO31O1
AC244257.3
finished
  GAP (type-3) length unknown    
5 CH17-98J9
HG1338
bMO98J9
AC245164.2
finished
6 CH17-277L15
HG1338
bMO277L15
AC245121.2
finished
7 CH17-31A6
HG1338
bMO31A6
AC245519.3
finished
8 CH17-174L20
HG1338
bMO174L20
AC245187.1
finished
9 CH17-4E9
HG1338
bMO4E9
AC245123.4
finished
10 CH17-61M15
HG1338
bMO61M15
AC246817.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 193835 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC245594.2 1 193835 -
193836 293091 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC245062.2 1 99256 -
293092 445777 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC244257.3 1 152686 -
445778 495777 4 N 50000 contig no
495778 708175 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AC245164.2 1 212398 -
708176 895790 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AC245121.2 14215 201829 +
895791 996210 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AC245519.3 106258 206677 +
996211 1049282 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AC245187.1 1 53072 -
1049283 1121235 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AC245123.4 1 71953 -
1121236 1302407 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AC246817.2 26666 207837 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH17-462D8
HG1339
bMO462D8
-
-
AC245594.2
finished
193835 CHORI-17 5' / 3'
1 / 99256
- / -
119933
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
2 CH17-247K4
HG1339
bMO247K4
-
-
AC245062.2
finished
219189 CHORI-17 5' / 3'
1 / 152686
- / -
49180
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
3 CH17-31O1
HG1339
bMO31O1
-
-
AC244257.3
finished
201866 CHORI-17        
  GAP (type-3) length unknown                  
5 CH17-98J9
HG1338
bMO98J9
-
-
AC245164.2
finished
212398 CHORI-17 5' / 5'
1 / 14215
- / -
14214
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
6 CH17-277L15
HG1338
bMO277L15
-
-
AC245121.2
finished
201829 CHORI-17 3' / 5'
201829 / 106258
- / -
106257
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
7 CH17-31A6
HG1338
bMO31A6
-
-
AC245519.3
finished
206677 CHORI-17 3' / 3'
206677 / 53072
- / -
159640
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
8 CH17-174L20
HG1338
bMO174L20
-
-
AC245187.1
finished
212712 CHORI-17 5' / 3'
1 / 71953
- / -
138354
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
9 CH17-4E9
HG1338
bMO4E9
-
-
AC245123.4
finished
210307 CHORI-17 5' / 5'
1 / 26666
- / -
26665
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
10 CH17-61M15
HG1338
bMO61M15
-
-
AC246817.2
finished
207837 CHORI-17        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
9
Clone HTGS Phases
finished
9
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
614,243
Total finished length of fin clones w/ overlap
1,866,650
Total finished length of fin clones w/o overlap
1,252,407
Total overlap length of fin+unfin clones
614,243
Total finished length of fin+unfin clones w/ overlap
1,866,650
Total finished length of fin+unfin clones w/o overlap
1,252,407

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Other links

* quick link - http://q.sanger.ac.uk/snya06lx