ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__PLACEHOLDER__5 (TPF updated: 2013-07-18)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH17-133H2
HSCHR5_PLACEHOLDER_CTG1
bMO133H2
AC244635.3
finished
2 CH17-39B16
HSCHR5_PLACEHOLDER_CTG1
bMO39B16
AC245690.2
finished
  GAP (type-2) length unknown    
4 CH17-64J14
HSCHR5_PLACEHOLDER_CTG1
bMO64J14
AC244260.3
finished
5 CH17-160G8
HSCHR5_PLACEHOLDER_CTG1
bMO160G8
AC243922.2
finished
6 CH17-468I21
HSCHR5_PLACEHOLDER_CTG1
bMO468I21
AC245931.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 138871 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC244635.3 1 138871 +
138872 343148 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC245690.2 1 204277 +
343149 393148 3 N 50000 contig yes
393149 620577 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC244260.3 1 227429 +
620578 771845 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC243922.2 1 151268 -
771846 982599 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC245931.3 1 210754 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH17-133H2
HSCHR5_PLACEHOLDER_CTG1
bMO133H2
-
-
AC244635.3
finished
213945 CHORI-17 3' / 5'
138871 / 1
- / -
75074
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
2 CH17-39B16
HSCHR5_PLACEHOLDER_CTG1
bMO39B16
-
-
AC245690.2
finished
204277 CHORI-17        
  GAP (type-2) length unknown                  
4 CH17-64J14
HSCHR5_PLACEHOLDER_CTG1
bMO64J14
-
-
AC244260.3
finished
227429 CHORI-17 3' / 3'
227429 / 151268
- / -
77608
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
5 CH17-160G8
HSCHR5_PLACEHOLDER_CTG1
bMO160G8
-
-
AC243922.2
finished
228876 CHORI-17 5' / 3'
1 / 210754
- / -
6
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
6 CH17-468I21
HSCHR5_PLACEHOLDER_CTG1
bMO468I21
-
-
AC245931.3
finished
210760 CHORI-17        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
152,688
Total finished length of fin clones w/ overlap
1,085,287
Total finished length of fin clones w/o overlap
932,599
Total overlap length of fin+unfin clones
152,688
Total finished length of fin+unfin clones w/ overlap
1,085,287
Total finished length of fin+unfin clones w/o overlap
932,599

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Other links

* quick link - http://q.sanger.ac.uk/eh1s1idk