ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__PLACEHOLDER__16 (TPF updated: 2017-07-25)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 ABC10-44052000G22
Hsachr16_PLACEHOLDER_ctg1
f10A44052000G22
EPN details
FO681525.1
finished
2 ABC10-44472500M11
Hsachr16_PLACEHOLDER_ctg1
f10A44472500M11
EPN details
FO681524.2
finished
3 ABC11-48004300E18
Hsachr16_PLACEHOLDER_ctg1
f11A48004300E18
EPN details
FO681538.2
contiguous
4 RP11-343H14
Hsachr16_PLACEHOLDER_ctg1
bA343H14
EPN details
FO681543.2
contiguous
  GAP (type-3) length unknown    
6 ABC10-45525300C5
Hsachr16_PLACEHOLDER_ctg3
f10A45525300C5
EPN details
FO681489.3
contiguous
  GAP (type-3) length unknown    
8 CTD-2547E10
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2547E10
EPN details
AC008740.7
finished
9
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINED
KF459689
KF459689.1
finished
8 CTD-2547E10
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2547E10
EPN details
AC008740.7
finished
10 CTB-31N19
Hschr16_1_ctg1_1_PLACEHOLDER
bK31N19
EPN details
AC005632.2
finished
11 RP11-338J22
Hschr16_1_ctg1_1_PLACEHOLDER
bA338J22
EPN details
AC092719.3
finished
12 RP11-645C24
Hschr16_1_ctg1_1_PLACEHOLDER
bA645C24
EPN details
AC092375.4
finished
13 CTD-2649C14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2649C14
EPN details
AC092119.3
finished
14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINED
KF456177
KF456177.1
finished
13 CTD-2649C14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2649C14
EPN details
AC092119.3
finished
15
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINED
KC877596
KC877596.1
finished
13 CTD-2649C14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2649C14
EPN details
AC092119.3
finished
16 RP11-101E7
Hschr16_1_ctg1_1_PLACEHOLDER
bA101E7
EPN details
AC009019.10
finished
17 RP11-141O15
Hschr16_1_ctg1_1_PLACEHOLDER
bA141O15
EPN details
AC009034.10
finished
18 RP11-21M24
Hschr16_1_ctg1_1_PLACEHOLDER
bA21M24
EPN details
AC092338.4
finished
19 RP11-368J21
Hschr16_1_ctg1_1_PLACEHOLDER
bA368J21
EPN details
AC106788.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 39189 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FO681525.1 1 39189 +
39190 69100 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FO681524.2 1 29911 +
69101 74100 3 N 5000 No overlap in database    
74101 111310 4 A FO681538.2 1 37210 +
111311 116310 5 N 5000 No overlap in database    
116311 322494 6 A FO681543.2 1 206184 +
322495 372494 7 N 50000 contig no
372495 379132 8 A FO681489.3 1 6638 +
379133 429132 9 N 50000 contig no
429133 541604 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC008740.7 45917 158388 -
541605 541676 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 KF459689.1 1 72 +
541677 587520 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC008740.7 1 45844 -
587521 772849 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC005632.2 15266 200594 +
772850 917496 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092719.3 32881 177527 +
917497 1084327 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092375.4 6445 173275 +
1084328 1089124 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092119.3 79535 84331 +
1089125 1089517 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 KF456177.1 1 393 -
1089518 1151763 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092119.3 84725 146970 +
1151764 1152314 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 KC877596.1 1 551 -
1152315 1176999 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092119.3 147522 172206 +
1177000 1334911 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC009019.10 21874 179785 +
1334912 1439944 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC009034.10 61387 166419 +
1439945 1563226 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092338.4 19845 143126 +
1563227 1727183 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC106788.3 1 163957 -

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 ABC10-44052000G22
Hsachr16_PLACEHOLDER_ctg1
f10A44052000G22
-
-
FO681525.1
finished
41189 ABC10 3' / 5'
39189 / 1
- / -
2000
0
Identified
2017-06-06
agp2oracle
humpub
 
2 ABC10-44472500M11
Hsachr16_PLACEHOLDER_ctg1
f10A44472500M11
-
-
FO681524.2
finished
29911 ABC10        
3 ABC11-48004300E18
Hsachr16_PLACEHOLDER_ctg1
f11A48004300E18
-
-
FO681538.2
contiguous
37210 ABC11        
4 RP11-343H14
Hsachr16_PLACEHOLDER_ctg1
bA343H14
-
-
FO681543.2
contiguous
206184 RPCI-11.2        
  GAP (type-3) length unknown                  
6 ABC10-45525300C5
Hsachr16_PLACEHOLDER_ctg3
f10A45525300C5
-
-
FO681489.3
contiguous
6638 ABC10        
  GAP (type-3) length unknown                  
8 CTD-2547E10
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2547E10
-
-
AC008740.7
finished
158388 CIT-HSP-D2 5' / 5'
45917 / 1
45844 / -
72
1.39
Identified
2016-02-24
fetch_ncbi...
humpub
 
9
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINED
KF459689
-
-
KF459689.1
finished
72 - 3' / 3'
72 / 45844
- / 112472
72
1.39
Identified
2016-02-24
fetch_ncbi...
humpub
 
8 CTD-2547E10
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2547E10
-
-
AC008740.7
finished
158388 CIT-HSP-D2 5' / 5'
1 / 15266
- / -
15260
0.2
Identified
2016-02-24
fetch_ncbi...
humpub
 
10 CTB-31N19
Hschr16_1_ctg1_1_PLACEHOLDER
bK31N19
-
-
AC005632.2
finished
200594 CIT978SK-B 3' / 5'
200594 / 32881
- / -
32855
0.2
Identified
2016-02-24
fetch_ncbi...
humpub
 
11 RP11-338J22
Hschr16_1_ctg1_1_PLACEHOLDER
bA338J22
-
-
AC092719.3
finished
177527 RPCI-11.2 3' / 5'
177527 / 6445
- / -
6444
0
Identified
2016-02-24
fetch_ncbi...
humpub
 
12 RP11-645C24
Hschr16_1_ctg1_1_PLACEHOLDER
bA645C24
-
-
AC092375.4
finished
173275 RPCI-11.3 3' / 5'
173275 / 79535
- / -
79519
0.06
Identified
2016-02-24
fetch_ncbi...
humpub
 
13 CTD-2649C14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2649C14
-
-
AC092119.3
finished
172206 CIT-HSP-D2 3' / 3'
84331 / 393
87482 / -
393
0.25
Identified
2016-02-24
fetch_ncbi...
humpub
 
14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINED
KF456177
-
-
KF456177.1
finished
393 - 5' / 5'
1 / 84725
- / 84331
393
0.25
Identified
2016-02-24
fetch_ncbi...
humpub
 
13 CTD-2649C14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2649C14
-
-
AC092119.3
finished
172206 CIT-HSP-D2 3' / 3'
146970 / 551
24685 / -
551
0.18
Identified
2016-02-24
fetch_ncbi...
humpub
 
15
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINED
KC877596
-
-
KC877596.1
finished
551 - 5' / 5'
1 / 147522
- / 146970
551
0.18
Identified
2016-02-24
fetch_ncbi...
humpub
 
13 CTD-2649C14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2649C14
-
-
AC092119.3
finished
172206 CIT-HSP-D2 3' / 5'
172206 / 21874
- / -
21873
0
Identified
2016-12-21
agp2oracle
humpub
 
16 RP11-101E7
Hschr16_1_ctg1_1_PLACEHOLDER
bA101E7
-
-
AC009019.10
finished
179785 RPCI-11.1 3' / 5'
179785 / 61387
- / -
61385
0
Identified
2016-02-24
fetch_ncbi...
humpub
 
17 RP11-141O15
Hschr16_1_ctg1_1_PLACEHOLDER
bA141O15
-
-
AC009034.10
finished
166419 RPCI-11.1 3' / 5'
166419 / 19845
- / -
19843
0.04
Identified
2016-02-24
fetch_ncbi...
humpub
 
18 RP11-21M24
Hschr16_1_ctg1_1_PLACEHOLDER
bA21M24
-
-
AC092338.4
finished
143126 RPCI-11.1 3' / 3'
143126 / 163957
- / -
6656
0.03
Identified
2016-02-24
fetch_ncbi...
humpub
 
19 RP11-368J21
Hschr16_1_ctg1_1_PLACEHOLDER
bA368J21
-
-
AC106788.3
finished
170613 RPCI-11.2        

Statistics

Help

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
17
Clone HTGS Phases
contiguous
3
finished
14
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
209,167
Total finished length of fin clones w/ overlap
1,614,049
Total finished length of fin clones w/o overlap
1,404,882
Total overlap length of fin+unfin clones
209,167
Total finished length of fin+unfin clones w/ overlap
1,864,081
Total finished length of fin+unfin clones w/o overlap
1,654,914

Dovetails

Help

# rank accession status length date
1 8 AC008740 unfinished 45,844 Mon, 24 Jul 2017 23:17
2 13 AC092119 unfinished 87,482 Mon, 24 Jul 2017 23:17

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