ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__PLACEHOLDER__16 (TPF updated: 2014-08-31)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 ABC10-44052000G22
Hsachr16_PLACEHOLDER_ctg1
f10A44052000G22
EPN details
FO681525.1
contiguous
2 ABC10-44472500M11
Hsachr16_PLACEHOLDER_ctg1
f10A44472500M11
EPN details
FO681524.2
finished
3 ABC11-48004300E18
Hsachr16_PLACEHOLDER_ctg1
f11A48004300E18
EPN details
FO681538.2
contiguous
4 RP11-343H14
Hsachr16_PLACEHOLDER_ctg1
bA343H14
EPN details
FO681543.2
contiguous
  GAP (type-3) length unknown    
6 ABC10-45525300C5
Hsachr16_PLACEHOLDER_ctg3
f10A45525300C5
EPN details
FO681489.2
unfinished
  GAP (type-3) length unknown    
8 76P18
HG926
76P18
AC241640.3
finished
9 102P16
HG926
102P16
AC243614.2
finished
10 437B07
HG926
437B07
AC241385.3
finished
11 210G07
HG926
210G07
AC244647.2
finished
12 54P02
HG926
54P02
AC241410.3
finished
13 251E10
HG926
251E10
AC241556.2
finished
14 92P16
HG926
92P16
AC241411.3
finished
15 52J16
HG926
52J16
AC243828.3
finished
16 459K07
HG926
459K07
AC243826.3
finished
  GAP (type-2) length unknown    
18 35L03
HG926
35L03
AC241400.3
finished
19 271C15
HG926
271C15
AC241409.3
finished
20 109O11
HG926
109O11
AC241988.3
finished
21 411I06
HG926
411I06
AC241401.3
finished
  GAP (type-2) length unknown    
23 457O05
HG926
457O05
AC241402.3
finished
  GAP (type-2) length unknown    
25 426E18
HG926
426E18
AC245044.1
finished
26 337K16
HG926
337K16
AC243806.3
finished
27 335C11
HG926
335C11
AC243914.3
finished
28 478I19
HG926
478I19
AC244166.2
finished
  GAP (type-2) length unknown    
30 137N19
HG926
137N19
AC243947.3
finished
31 408M10
HG926
408M10
AC244010.2
finished
32 282F08
HG926
282F08
AC244227.2
finished
33 440E11
HG926
440E11
AC243825.3
finished
34 191D22
HG926
191D22
AC243616.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 41189 1 A FO681525.1 1 41189 +
41190 69100 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 2 - 2 FO681524.2 2001 29911 +
69101 74100 3 N 5000 No overlap in database    
74101 111310 4 A FO681538.2 1 37210 +
111311 116310 5 N 5000 No overlap in database    
116311 322494 6 A FO681543.2 1 206184 +
322495 372494 7 N 50000 contig no
372495 422494 8 N 50000 clone no
422495 472494 9 N 50000 contig no
472495 707366 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AC241640.3 1 234872 +
707367 804924 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AC243614.2 1 97558 -
804925 855796 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AC241385.3 1 50872 -
855797 936504 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AC244647.2 141738 222445 +
936505 1075153 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AC241410.3 55656 194304 +
1075154 1239038 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AC241556.2 66751 230635 +
1239039 1353525 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AC241411.3 104061 218547 +
1353526 1408271 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AC243828.3 1 54746 -
1408272 1485999 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AC243826.3 7101 84828 +
1486000 1535999 19 N 50000 contig yes
1536000 1740244 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 23 AC241400.3 1 204245 -
1740245 1944691 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 23 AC241409.3 1 204447 -
1944692 2059252 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 23 AC241988.3 79536 194096 +
2059253 2143171 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 23 AC241401.3 1 83919 -
2143172 2193171 24 N 50000 contig yes
2193172 2430635 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 AC241402.3 1 237464 +
2430636 2480635 26 N 50000 contig yes
2480636 2698586 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 30 AC245044.1 1 217951 +
2698587 2915684 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 30 AC243806.3 1 217098 -
2915685 2972668 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 30 AC243914.3 153984 210967 +
2972669 3125132 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 30 AC244166.2 56762 209225 +
3125133 3175132 31 N 50000 contig yes
3175133 3383779 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 36 AC243947.3 1 208647 -
3383780 3463552 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 36 AC244010.2 1 79773 -
3463553 3596159 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 36 AC244227.2 1 132607 -
3596160 3758733 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 36 AC243825.3 74204 236777 +
3758734 3918596 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 36 AC243616.2 33895 193757 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 ABC10-44052000G22
Hsachr16_PLACEHOLDER_ctg1
f10A44052000G22
EPN details
Indexed Clone Assigned
31-JUL-13
FO681525.1
contiguous
41189 ABC10 3' / 5'
41189 / 2001
- / -
2000
0
Identified
2013-07-27
find_overl...
humpub
 
2 ABC10-44472500M11
Hsachr16_PLACEHOLDER_ctg1
f10A44472500M11
EPN details
Analysed
25-JUL-13
FO681524.2
finished
29911 ABC10        
3 ABC11-48004300E18
Hsachr16_PLACEHOLDER_ctg1
f11A48004300E18
EPN details
Indexed Clone Assigned
31-JUL-13
FO681538.2
contiguous
37210 ABC11        
4 RP11-343H14
Hsachr16_PLACEHOLDER_ctg1
bA343H14
EPN details
Indexed Clone Assigned
26-JUN-13
FO681543.2
contiguous
206184 RPCI-11.2        
  GAP (type-3) length unknown                  
6 ABC10-45525300C5
Hsachr16_PLACEHOLDER_ctg3
f10A45525300C5
EPN details
Indexed Clone Assigned
31-JUL-13
FO681489.2
unfinished
41940 ABC10        
  GAP (type-3) length unknown                  
8 76P18
HG926
76P18
-
-
AC241640.3
finished
234872 - 3' / 3'
234872 / 97558
- / -
117610
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
9 102P16
HG926
102P16
-
-
AC243614.2
finished
215173 - 5' / 3'
1 / 50872
- / -
176471
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
10 437B07
HG926
437B07
-
-
AC241385.3
finished
227343 - 5' / 5'
1 / 141738
- / -
141737
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
11 210G07
HG926
210G07
-
-
AC244647.2
finished
222445 - 3' / 5'
222445 / 55656
- / -
55655
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
12 54P02
HG926
54P02
-
-
AC241410.3
finished
194304 - 3' / 5'
194304 / 66751
- / -
66750
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
13 251E10
HG926
251E10
-
-
AC241556.2
finished
230635 - 3' / 5'
230635 / 104061
- / -
104060
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
14 92P16
HG926
92P16
-
-
AC241411.3
finished
218547 - 3' / 3'
218547 / 54746
- / -
182051
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
15 52J16
HG926
52J16
-
-
AC243828.3
finished
236797 - 5' / 5'
1 / 7101
- / -
7100
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
16 459K07
HG926
459K07
-
-
AC243826.3
finished
84828 -        
  GAP (type-2) length unknown                  
18 35L03
HG926
35L03
-
-
AC241400.3
finished
204245 - 5' / 3'
1 / 204447
- / -
26184
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
19 271C15
HG926
271C15
-
-
AC241409.3
finished
230631 - 5' / 5'
1 / 79536
- / -
79534
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
20 109O11
HG926
109O11
-
-
AC241988.3
finished
194096 - 3' / 3'
194096 / 83919
- / -
114566
0.03
Identified
2014-08-31
fetch_ncbi...
humpub
 
21 411I06
HG926
411I06
-
-
AC241401.3
finished
198522 -        
  GAP (type-2) length unknown                  
23 457O05
HG926
457O05
-
-
AC241402.3
finished
237464 -        
  GAP (type-2) length unknown                  
25 426E18
HG926
426E18
-
-
AC245044.1
finished
217951 - 3' / 3'
217951 / 217098
- / -
11522
0.01
Identified
2014-08-31
fetch_ncbi...
humpub
 
26 337K16
HG926
337K16
-
-
AC243806.3
finished
228620 - 5' / 5'
1 / 153984
- / -
153950
0.02
Identified
2014-08-31
fetch_ncbi...
humpub
 
27 335C11
HG926
335C11
-
-
AC243914.3
finished
210967 - 3' / 5'
210967 / 56762
- / -
56756
0.42
Identified
2014-08-31
fetch_ncbi...
humpub
 
28 478I19
HG926
478I19
-
-
AC244166.2
finished
209225 -        
  GAP (type-2) length unknown                  
30 137N19
HG926
137N19
-
-
AC243947.3
finished
208647 - 5' / 3'
1 / 79773
- / -
138078
0.59
Identified
2014-08-31
fetch_ncbi...
humpub
 
31 408M10
HG926
408M10
-
-
AC244010.2
finished
218654 - 5' / 3'
1 / 132607
- / -
78190
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
32 282F08
HG926
282F08
-
-
AC244227.2
finished
210797 - 5' / 5'
1 / 74204
- / -
74203
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
33 440E11
HG926
440E11
-
-
AC243825.3
finished
236777 - 3' / 5'
236777 / 33895
- / -
33894
0
Identified
2014-08-31
fetch_ncbi...
humpub
 
34 191D22
HG926
191D22
-
-
AC243616.2
finished
193757 -        

Statistics

Clone Summary

Number of gaps
6
Gap types
type-2
4
type-3
2
Total clones
28
Clone HTGS Phases
contiguous
3
finished
24
unfinished
1
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,618,311
Total finished length of fin clones w/ overlap
4,895,208
Total finished length of fin clones w/o overlap
3,276,897
Total overlap length of fin+unfin clones
1,620,311
Total finished length of fin+unfin clones w/ overlap
5,221,731
Total finished length of fin+unfin clones w/o overlap
3,601,420

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Other links

* quick link - http://q.sanger.ac.uk/sc7t08ay