ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__PLACEHOLDER__16 (TPF updated: 2017-05-27)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 ABC10-44052000G22
Hsachr16_PLACEHOLDER_ctg1
f10A44052000G22
FO681525.1
finished
2 ABC10-44472500M11
Hsachr16_PLACEHOLDER_ctg1
f10A44472500M11
FO681524.2
finished
3 ABC11-48004300E18
Hsachr16_PLACEHOLDER_ctg1
f11A48004300E18
FO681538.2
contiguous
4 RP11-343H14
Hsachr16_PLACEHOLDER_ctg1
bA343H14
FO681543.2
contiguous
  GAP (type-3) length unknown    
6 ABC10-45525300C5
Hsachr16_PLACEHOLDER_ctg3
f10A45525300C5
FO681489.3
contiguous
  GAP (type-3) length unknown    
8 CTD-2547E10
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2547E10
AC008740.7
finished
9
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINED
KF459689
KF459689.1
finished
8 CTD-2547E10
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2547E10
AC008740.7
finished
10 CTB-31N19
Hschr16_1_ctg1_1_PLACEHOLDER
bK31N19
AC005632.2
finished
11 RP11-338J22
Hschr16_1_ctg1_1_PLACEHOLDER
bA338J22
AC092719.3
finished
12 RP11-645C24
Hschr16_1_ctg1_1_PLACEHOLDER
bA645C24
AC092375.4
finished
13 CTD-2649C14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2649C14
AC092119.3
finished
14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINED
KF456177
KF456177.1
finished
13 CTD-2649C14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2649C14
AC092119.3
finished
15
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINED
KC877596
KC877596.1
finished
13 CTD-2649C14
Hschr16_1_ctg1_1_PLACEHOLDER
CONTAINER
bK2649C14
AC092119.3
finished
16 RP11-101E7
Hschr16_1_ctg1_1_PLACEHOLDER
bA101E7
AC009019.10
finished
17 RP11-141O15
Hschr16_1_ctg1_1_PLACEHOLDER
bA141O15
AC009034.10
finished
18 RP11-21M24
Hschr16_1_ctg1_1_PLACEHOLDER
bA21M24
AC092338.4
finished
19 RP11-368J21
Hschr16_1_ctg1_1_PLACEHOLDER
bA368J21
AC106788.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 41189 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FO681525.1 1 41189 +
41190 69100 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FO681524.2 2001 29911 +
69101 74100 3 N 5000 No overlap in database    
74101 111310 4 A FO681538.2 1 37210 +
111311 116310 5 N 5000 No overlap in database    
116311 322494 6 A FO681543.2 1 206184 +
322495 372494 7 N 50000 contig no
372495 379132 8 A FO681489.3 1 6638 +
379133 429132 9 N 50000 contig no
429133 541604 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC008740.7 45917 158388 -
541605 541676 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 KF459689.1 1 72 +
541677 587520 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC008740.7 1 45844 -
587521 772849 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC005632.2 15266 200594 +
772850 917496 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092719.3 32881 177527 +
917497 1084327 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092375.4 6445 173275 +
1084328 1089124 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092119.3 79535 84331 +
1089125 1089517 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 KF456177.1 1 393 -
1089518 1151763 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092119.3 84725 146970 +
1151764 1152314 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 KC877596.1 1 551 -
1152315 1176999 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092119.3 147522 172206 +
1177000 1334911 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC009019.10 21874 179785 +
1334912 1439944 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC009034.10 61387 166419 +
1439945 1563226 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC092338.4 19845 143126 +
1563227 1727183 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 24 AC106788.3 1 163957 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
17
Clone HTGS Phases
contiguous
3
finished
14
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
209,167
Total finished length of fin clones w/ overlap
1,614,049
Total finished length of fin clones w/o overlap
1,404,882
Total overlap length of fin+unfin clones
209,167
Total finished length of fin+unfin clones w/ overlap
1,864,081
Total finished length of fin+unfin clones w/o overlap
1,654,914

Dovetails

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# rank accession status length date
1 8 AC008740 unfinished 45,844 Fri, 26 May 2017 23:20
2 13 AC092119 unfinished 87,482 Fri, 26 May 2017 23:20

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