ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__PLACEHOLDER__22 (TPF updated: 2015-07-06)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 ABC12-46736700I13
Hsachr22_PLACEHOLDER_ctg1
f12A46736700I13

-
2 ABC12-49080100H18
Hsachr22_PLACEHOLDER_ctg1
f12A49080100H18
FO681532.3
unfinished
3 ABC12-47020000M7
Hsachr22_PLACEHOLDER_ctg1
f12A47020000M7
FO681529.2
contiguous
4 ABC12-46660900L7
Hsachr22_PLACEHOLDER_ctg1
f12A46660900L7
FO681517.3
finished
5 ABC12-46900900H23
Hsachr22_PLACEHOLDER_ctg1
f12A46900900H23
FO681526.3
finished
6 ABC12-49200300I1
Hsachr22_PLACEHOLDER_ctg1
f12A49200300I1
FO681510.3
finished
7 ABC12-49169300H21
Hsachr22_PLACEHOLDER_ctg1
f12A49169300H21
FO681509.1
finished
8 ABC12-49080700F16
Hsachr22_PLACEHOLDER_ctg1
f12A49080700F16
FO681511.2
finished
9 ABC12-49026800P7
Hsachr22_PLACEHOLDER_ctg1
f12A49026800P7
FO681530.2
contiguous
10 ABC12-49057500M11
Hsachr22_PLACEHOLDER_ctg1
f12A49057500M11
FO681527.2
contiguous
11 ABC12-7904349E3
Hsachr22_PLACEHOLDER_ctg1
f12A7904349E3

-
12 ABC12-49081500K13
Hsachr22_PLACEHOLDER_ctg1
f12A49081500K13
FO681531.2
contiguous
13 ABC12-49287700N20
Hsachr22_PLACEHOLDER_ctg1
f12A49287700N20
FO681507.1
contiguous
14 ABC12-49070300A13
Hsachr22_PLACEHOLDER_ctg1
f12A49070300A13
FO681528.1
contiguous

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 50000 1 N 50000 clone no
50001 100000 2 N 50000 clone yes
100001 124387 3 A FO681529.2 1 24387 +
124388 164696 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 FO681517.3 1 40309 +
164697 191021 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 FO681526.3 2001 28325 +
191022 208790 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 FO681510.3 11559 29327 -
208791 249366 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 FO681509.1 1 40576 -
249367 288388 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 FO681511.2 1065 40086 +
288389 321369 9 A FO681530.2 6778 39758 +
321370 346262 10 A FO681527.2 13092 37984 +
346263 396262 11 N 50000 clone yes
396263 435058 12 A FO681531.2 1 38796 +
435059 471322 13 A FO681507.1 2713 38976 +
471323 507611 14 A FO681528.1 3330 39618 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
0
Total clones
14
Clone HTGS Phases
contiguous
6
finished
5
unfinished
1
Number of clones w/o accession
2
Clones w/o htgs phase
2
Non-htgs clonenames
ABC12-46736700I13 (project unknown), ABC12-7904349E3 (project unknown)

Overlap Summary

Total overlap length of fin clones
25,949
Total finished length of fin clones w/ overlap
189,950
Total finished length of fin clones w/o overlap
164,001
Total overlap length of fin+unfin clones
70,250
Total finished length of fin+unfin clones w/ overlap
463,745
Total finished length of fin+unfin clones w/o overlap
393,495

Dovetails

# rank accession status length date
1 3 FO681529.2 unfinished 881 Sun, 05 Jul 2015 23:34

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* quick link - http://q.sanger.ac.uk/fqoc1cdv