ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__PLACEHOLDER__22 (TPF updated: 2014-07-29)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 ABC12-46736700I13
Hsachr22_PLACEHOLDER_ctg1
f12A46736700I13
EPN details

-
2 ABC12-49080100H18
Hsachr22_PLACEHOLDER_ctg1
f12A49080100H18
EPN details
FO681532.3
unfinished
3 ABC12-47020000M7
Hsachr22_PLACEHOLDER_ctg1
f12A47020000M7
EPN details
FO681529.2
contiguous
4 ABC12-46660900L7
Hsachr22_PLACEHOLDER_ctg1
f12A46660900L7
EPN details
FO681517.3
finished
5 ABC12-46900900H23
Hsachr22_PLACEHOLDER_ctg1
f12A46900900H23
EPN details
FO681526.3
finished
6 ABC12-49200300I1
Hsachr22_PLACEHOLDER_ctg1
f12A49200300I1
EPN details
FO681510.3
contiguous
7 ABC12-49169300H21
Hsachr22_PLACEHOLDER_ctg1
f12A49169300H21
EPN details
FO681509.1
finished
8 ABC12-49080700F16
Hsachr22_PLACEHOLDER_ctg1
f12A49080700F16
EPN details
FO681511.2
contiguous
9 ABC12-49026800P7
Hsachr22_PLACEHOLDER_ctg1
f12A49026800P7
EPN details
FO681530.2
contiguous
10 ABC12-49057500M11
Hsachr22_PLACEHOLDER_ctg1
f12A49057500M11
EPN details
FO681527.2
contiguous
11 ABC12-7904349E3
Hsachr22_PLACEHOLDER_ctg1
f12A7904349E3
EPN details

-
12 ABC12-49081500K13
Hsachr22_PLACEHOLDER_ctg1
f12A49081500K13
EPN details
FO681531.2
contiguous
13 ABC12-49287700N20
Hsachr22_PLACEHOLDER_ctg1
f12A49287700N20
EPN details
FO681507.1
contiguous
14 ABC12-49070300A13
Hsachr22_PLACEHOLDER_ctg1
f12A49070300A13
EPN details
FO681528.1
contiguous

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 50000 1 N 50000 clone no
50001 100000 2 N 50000 clone yes
100001 124387 3 A FO681529.2 1 24387 +
124388 164696 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 FO681517.3 1 40309 +
164697 191021 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 FO681526.3 2001 28325 +
191022 208790 6 A FO681510.3 11559 29327 -
208791 249366 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 FO681509.1 1 40576 -
249367 288388 8 A FO681511.2 1065 40086 +
288389 321369 9 A FO681530.2 6778 39758 +
321370 346262 10 A FO681527.2 13092 37984 +
346263 396262 11 N 50000 clone yes
396263 435058 12 A FO681531.2 1 38796 +
435059 471322 13 A FO681507.1 2713 38976 +
471323 507611 14 A FO681528.1 3330 39618 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 ABC12-46736700I13
Hsachr22_PLACEHOLDER_ctg1
f12A46736700I13
EPN details
Cleared for library making
19-MAY-14

-
- ABC12        
2 ABC12-49080100H18
Hsachr22_PLACEHOLDER_ctg1
f12A49080100H18
EPN details
Indexed Clone Assigned
20-JUN-13
FO681532.3
unfinished
39337 ABC12 3' / 5'
39337 / 4337
- / 881
3455
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
3 ABC12-47020000M7
Hsachr22_PLACEHOLDER_ctg1
f12A47020000M7
EPN details
Indexed Clone Assigned
19-JUL-13
FO681529.2
contiguous
39326 ABC12 3' / 5'
24387 / 1
- / -
14939
0.03
Identified
2014-07-28
fetch_ncbi...
humpub
 
4 ABC12-46660900L7
Hsachr22_PLACEHOLDER_ctg1
f12A46660900L7
EPN details
Analysed
16-AUG-13
FO681517.3
finished
40309 ABC12 3' / 5'
40309 / 2001
- / -
2000
0
Identified
2014-07-28
find_overl...
humpub
 
5 ABC12-46900900H23
Hsachr22_PLACEHOLDER_ctg1
f12A46900900H23
EPN details
Analysed
23-MAY-14
FO681526.3
finished
28325 ABC12 3' / 3'
28325 / 29327
- / -
11327
0.12
Identified
2014-07-28
find_overl...
humpub
 
6 ABC12-49200300I1
Hsachr22_PLACEHOLDER_ctg1
f12A49200300I1
EPN details
Indexed Clone Assigned
31-JUL-13
FO681510.3
contiguous
40654 ABC12 5' / 3'
11559 / 40576
- / -
11558
0
Identified
2014-07-28
agp2oracle
humpub
 
7 ABC12-49169300H21
Hsachr22_PLACEHOLDER_ctg1
f12A49169300H21
EPN details
Analysed
25-JUL-13
FO681509.1
finished
40576 ABC12 5' / 5'
1 / 1065
- / -
1064
0
Identified
2014-07-28
find_overl...
humpub
 
8 ABC12-49080700F16
Hsachr22_PLACEHOLDER_ctg1
f12A49080700F16
EPN details
Indexed Clone Assigned
31-JUL-13
FO681511.2
contiguous
40086 ABC12 3' / 5'
40086 / 6778
- / -
6775
0.22
Identified
2014-07-28
find_overl...
humpub
 
9 ABC12-49026800P7
Hsachr22_PLACEHOLDER_ctg1
f12A49026800P7
EPN details
Indexed Clone Assigned
19-JUN-13
FO681530.2
contiguous
39758 ABC12 3' / 5'
39758 / 13092
- / -
13091
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
10 ABC12-49057500M11
Hsachr22_PLACEHOLDER_ctg1
f12A49057500M11
EPN details
Indexed Clone Assigned
19-JUN-13
FO681527.2
contiguous
37984 ABC12        
11 ABC12-7904349E3
Hsachr22_PLACEHOLDER_ctg1
f12A7904349E3
EPN details
Cancelled
10-JUN-13

-
- ABC12        
12 ABC12-49081500K13
Hsachr22_PLACEHOLDER_ctg1
f12A49081500K13
EPN details
Indexed Clone Assigned
20-JUN-13
FO681531.2
contiguous
38796 ABC12 3' / 5'
38796 / 2713
- / -
2712
0.15
Identified
2014-07-28
fetch_ncbi...
humpub
 
13 ABC12-49287700N20
Hsachr22_PLACEHOLDER_ctg1
f12A49287700N20
EPN details
Indexed Clone Assigned
31-JUL-13
FO681507.1
contiguous
38976 ABC12 3' / 5'
38976 / 3330
- / -
3329
0.12
Identified
2014-07-28
fetch_ncbi...
humpub
 
14 ABC12-49070300A13
Hsachr22_PLACEHOLDER_ctg1
f12A49070300A13
EPN details
Indexed Clone Assigned
19-JUN-13
FO681528.1
contiguous
39618 ABC12        

Statistics

Clone Summary

Number of gaps
0
Total clones
14
Clone HTGS Phases
contiguous
8
finished
3
unfinished
1
Number of clones w/o accession
2
Clones w/o htgs phase
2
Non-htgs clonenames
ABC12-46736700I13 (f12A46736700I13), ABC12-7904349E3 (f12A7904349E3)

Overlap Summary

Total overlap length of fin clones
2,000
Total finished length of fin clones w/ overlap
109,210
Total finished length of fin clones w/o overlap
107,210
Total overlap length of fin+unfin clones
70,250
Total finished length of fin+unfin clones w/ overlap
463,745
Total finished length of fin+unfin clones w/o overlap
393,495

Dovetails

# rank accession status length date
1 3 FO681529.2 unfinished 881 Tue, 29 Jul 2014 00:01

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Other links

* quick link - http://q.sanger.ac.uk/fqoc1cdv