ChromoView - clone / Assembly sequencing status

Human: Sub region UNPL_20 (TPF updated: 2013-07-26)

TPF

# Clone ext/Contig Clone int Acc/Fin
1
HSCHR20_CTG1_UNLOCALIZED
ABBA01015867
ABBA01015867.1
finished
  GAP (type-2) length 1471 bps    
3
HSCHR20_CTG1_UNLOCALIZED
ABBA01015868
ABBA01015868.1
finished
  GAP (type-2) length 20 bps    
5
HSCHR20_CTG1_UNLOCALIZED
ABBA01015869
ABBA01015869.1
finished
  GAP (type-2) length 20 bps    
7
HSCHR20_CTG1_UNLOCALIZED
ABBA01015870
ABBA01015870.1
finished
  GAP (type-2) length 148 bps    
9
HSCHR20_CTG1_UNLOCALIZED
ABBA01015871
ABBA01015871.1
finished
  GAP (type-2) length 60 bps    
11
HSCHR20_CTG1_UNLOCALIZED
ABBA01015872
ABBA01015872.1
finished
  GAP (type-2) length 16596 bps    
13
HSCHR20_CTG1_UNLOCALIZED
ABBA01015873
ABBA01015873.1
finished
  GAP (type-2) length 20 bps    
15
HSCHR20_CTG1_UNLOCALIZED
ABBA01015874
ABBA01015874.1
finished
  GAP (type-2) length 928 bps    
17
HSCHR20_CTG1_UNLOCALIZED
ABBA01015875
ABBA01015875.1
finished
  GAP (type-2) length 20 bps    
19
HSCHR20_CTG1_UNLOCALIZED
ABBA01015876
ABBA01015876.1
finished
  GAP (type-2) length 20 bps    
21
HSCHR20_CTG1_UNLOCALIZED
ABBA01015877
ABBA01015877.1
finished
  GAP (type-2) length 6027 bps    
23
HSCHR20_CTG1_UNLOCALIZED
ABBA01015878
ABBA01015878.1
finished
24 RP11-20K6
HSCHR20_CTG1_UNLOCALIZED
bA20K6
EPN details
AL837517.14
finished
25
HSCHR20_CTG1_UNLOCALIZED
ABBA01015879
ABBA01015879.1
finished
  GAP (type-2) length unknown    
  GAP (type-3) length unknown    
28 RP11-364J18
Hschr20_random_ctg1
bA364J18
AC011850.12
finished
  GAP (type-2) length unknown    
  GAP (type-3) length unknown    
31 RP11-462H3
Hschr20_random_ctg2
bA462H3
AC018688.9
finished
32 RP11-755J8
Hschr20_random_ctg2
bA755J8
AC092107.5
finished
  GAP (type-2) length unknown    
  GAP (type-3) length unknown    
35 RP11-150N22
Hschr20_random_ctg3
bA150N22
AC104301.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 22145 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 ABBA01015867.1 1 22145 +
22146 23616 2 N 1471 contig yes # PAIRED ENDS
23617 25776 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 ABBA01015868.1 1 2160 -
25777 25796 4 N 20 contig yes # PAIRED ENDS
25797 28857 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 ABBA01015869.1 1 3061 -
28858 28877 6 N 20 contig yes # PAIRED ENDS
28878 61036 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 ABBA01015870.1 1 32159 +
61037 61184 8 N 148 contig yes # PAIRED ENDS
61185 91629 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 ABBA01015871.1 1 30445 +
91630 91689 10 N 60 contig yes # PAIRED ENDS
91690 114427 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 ABBA01015872.1 1 22738 +
114428 131023 12 N 16596 contig yes # PAIRED ENDS
131024 132373 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 ABBA01015873.1 1 1350 +
132374 132393 14 N 20 contig yes # PAIRED ENDS
132394 138550 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 ABBA01015874.1 1 6157 +
138551 139478 16 N 928 contig yes # PAIRED ENDS
139479 146910 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 ABBA01015875.1 1 7432 -
146911 146930 18 N 20 contig yes # PAIRED ENDS
146931 160224 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 ABBA01015876.1 1 13294 +
160225 160244 20 N 20 contig yes # PAIRED ENDS
160245 161361 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 ABBA01015877.1 1 1117 -
161362 167388 22 N 6027 contig yes # PAIRED ENDS
167389 229272 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 ABBA01015878.1 1 61884 +
229273 319357 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AL837517.14 1 90085 +
319358 396719 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 ABBA01015879.1 34199 111560 +
396720 446719 26 N 50000 contig yes
446720 496719 27 N 50000 contig no
496720 661400 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 28 AC011850.12 1 164681 +
661401 711400 29 N 50000 contig yes
711401 761400 30 N 50000 contig no
761401 931604 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 32 AC018688.9 1 170204 -
931605 1067221 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 32 AC092107.5 2001 137617 +
1067222 1117221 33 N 50000 contig yes
1117222 1167221 34 N 50000 contig no
1167222 1356831 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 AC104301.2 1 189610 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1
HSCHR20_CTG1_UNLOCALIZED
ABBA01015867
-
-
ABBA01015867.1
finished
22145 -        
  GAP (type-2) length 1471 bps                  
3
HSCHR20_CTG1_UNLOCALIZED
ABBA01015868
-
-
ABBA01015868.1
finished
2160 -        
  GAP (type-2) length 20 bps                  
5
HSCHR20_CTG1_UNLOCALIZED
ABBA01015869
-
-
ABBA01015869.1
finished
3061 -        
  GAP (type-2) length 20 bps                  
7
HSCHR20_CTG1_UNLOCALIZED
ABBA01015870
-
-
ABBA01015870.1
finished
32159 -        
  GAP (type-2) length 148 bps                  
9
HSCHR20_CTG1_UNLOCALIZED
ABBA01015871
-
-
ABBA01015871.1
finished
30445 -        
  GAP (type-2) length 60 bps                  
11
HSCHR20_CTG1_UNLOCALIZED
ABBA01015872
-
-
ABBA01015872.1
finished
22738 -        
  GAP (type-2) length 16596 bps                  
13
HSCHR20_CTG1_UNLOCALIZED
ABBA01015873
-
-
ABBA01015873.1
finished
1350 -        
  GAP (type-2) length 20 bps                  
15
HSCHR20_CTG1_UNLOCALIZED
ABBA01015874
-
-
ABBA01015874.1
finished
6157 -        
  GAP (type-2) length 928 bps                  
17
HSCHR20_CTG1_UNLOCALIZED
ABBA01015875
-
-
ABBA01015875.1
finished
7432 -        
  GAP (type-2) length 20 bps                  
19
HSCHR20_CTG1_UNLOCALIZED
ABBA01015876
-
-
ABBA01015876.1
finished
13294 -        
  GAP (type-2) length 20 bps                  
21
HSCHR20_CTG1_UNLOCALIZED
ABBA01015877
-
-
ABBA01015877.1
finished
1117 -        
  GAP (type-2) length 6027 bps                  
23
HSCHR20_CTG1_UNLOCALIZED
ABBA01015878
-
-
ABBA01015878.1
finished
64613 - 3' / 5'
61884 / 1
- / -
2729
0.11
Identified
2014-10-21
fetch_ncbi...
humpub
 
24 RP11-20K6
HSCHR20_CTG1_UNLOCALIZED
bA20K6
EPN details
Analysed
07-AUG-04
AL837517.14
finished
90085 RPCI-11.1 3' / 5'
90085 / 34199
- / -
34192
0.13
Identified
2014-10-21
fetch_ncbi...
humpub
 
25
HSCHR20_CTG1_UNLOCALIZED
ABBA01015879
-
-
ABBA01015879.1
finished
111560 -        
  GAP (type-2) length unknown                  
  GAP (type-3) length unknown                  
28 RP11-364J18
Hschr20_random_ctg1
bA364J18
-
-
AC011850.12
finished
164681 RPCI-11.2        
  GAP (type-2) length unknown                  
  GAP (type-3) length unknown                  
31 RP11-462H3
Hschr20_random_ctg2
bA462H3
-
-
AC018688.9
finished
170204 RPCI-11.2 5' / 5'
1 / 2001
- / -
1999
0.1
Identified
2014-10-21
fetch_ncbi...
humpub
 
32 RP11-755J8
Hschr20_random_ctg2
bA755J8
-
-
AC092107.5
finished
137617 RPCI-11.3        
  GAP (type-2) length unknown                  
  GAP (type-3) length unknown                  
35 RP11-150N22
Hschr20_random_ctg3
bA150N22
-
-
AC104301.2
finished
189610 RPCI-11.1        

Statistics

Clone Summary

Number of gaps
17
Gap types
type-2
14
type-3
3
Total clones
18
Clone HTGS Phases
finished
18
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
38,920
Total finished length of fin clones w/ overlap
1,070,428
Total finished length of fin clones w/o overlap
1,031,508
Total overlap length of fin+unfin clones
38,920
Total finished length of fin+unfin clones w/ overlap
1,070,428
Total finished length of fin+unfin clones w/o overlap
1,031,508

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Other links

* quick link - http://q.sanger.ac.uk/h9zn9ugv