ChromoView - clone / Assembly sequencing status

Human: Sub region UNPL_14 (TPF updated: 2014-11-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-435B5
Hschr14_ctg1_UNLOCALIZED
bA435B5
EPN details
BX004987.9
finished
  GAP (type-3) length unknown    
3 RP11-512A4
Hschr14_ctg2_UNLOCALIZED
bA512A4
EPN details
AL671532.13
finished
  GAP (type-3) length unknown    
5 RP11-1320P3
Hschr14_ctg3_UNLOCALIZED
bA1320P3
AC138774.4
finished
  GAP (type-3) length unknown    
7 RP11-1368F8
Hschr14_ctg4_UNLOCALIZED
bA1368F8
AC145212.1
finished
  GAP (type-3) length unknown    
9 ABC10-44174400F13
Hschr14_ctg5_UNLOCALIZED
f10A44174400F13
AC242006.2
finished
  GAP (type-3) length unknown    
11 ABC14-50193100E16
Hschr14_ctg6_UNLOCALIZED
f14A50193100E16
AC242209.3
finished
  GAP (type-3) length unknown    
13 RP11-1172A19
Hschr14_ctg7_UNLOCALIZED
bA1172A19
AC145616.2
finished
  GAP (type-3) length unknown    
15 ABC10-44145400L1
Hschr14_ctg8_UNLOCALIZED
f10A44145400L1
AC233755.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 201709 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 BX004987.9 1 201709 +
201710 251709 2 N 50000 contig no
251710 462882 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AL671532.13 1 211173 +
462883 512882 4 N 50000 contig no
512883 706932 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AC138774.4 1 194050 +
706933 756932 6 N 50000 contig no
756933 948401 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC145212.1 1 191469 +
948402 998401 8 N 50000 contig no
998402 1036516 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC242006.2 1 38115 +
1036517 1086516 10 N 50000 contig no
1086517 1126071 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 AC242209.3 1 39555 +
1126072 1176071 12 N 50000 contig no
1176072 1348881 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 AC145616.2 1 172810 +
1348882 1398881 14 N 50000 contig no
1398882 1442620 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 AC233755.2 1 43739 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-435B5
Hschr14_ctg1_UNLOCALIZED
bA435B5
EPN details
Submitted to EMBL
12-JAN-09
BX004987.9
finished
201709 RPCI-11.2        
  GAP (type-3) length unknown                  
3 RP11-512A4
Hschr14_ctg2_UNLOCALIZED
bA512A4
EPN details
Submitted to EMBL
12-JAN-09
AL671532.13
finished
211173 RPCI-11.2        
  GAP (type-3) length unknown                  
5 RP11-1320P3
Hschr14_ctg3_UNLOCALIZED
bA1320P3
-
-
AC138774.4
finished
194050 RPCI-11.5        
  GAP (type-3) length unknown                  
7 RP11-1368F8
Hschr14_ctg4_UNLOCALIZED
bA1368F8
-
-
AC145212.1
finished
191469 RPCI-11.5        
  GAP (type-3) length unknown                  
9 ABC10-44174400F13
Hschr14_ctg5_UNLOCALIZED
f10A44174400F13
-
-
AC242006.2
finished
38115 ABC10        
  GAP (type-3) length unknown                  
11 ABC14-50193100E16
Hschr14_ctg6_UNLOCALIZED
f14A50193100E16
-
-
AC242209.3
finished
39555 ABC14        
  GAP (type-3) length unknown                  
13 RP11-1172A19
Hschr14_ctg7_UNLOCALIZED
bA1172A19
-
-
AC145616.2
finished
172810 RPCI-11.5        
  GAP (type-3) length unknown                  
15 ABC10-44145400L1
Hschr14_ctg8_UNLOCALIZED
f10A44145400L1
-
-
AC233755.2
finished
43739 ABC10        

Statistics

Clone Summary

Number of gaps
7
Gap types
type-3
7
Total clones
8
Clone HTGS Phases
finished
8
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
1,092,620
Total finished length of fin clones w/o overlap
1,092,620
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
1,092,620
Total finished length of fin+unfin clones w/o overlap
1,092,620

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Other links

* quick link - http://q.sanger.ac.uk/bz03uxl8