ChromoView - clone / Assembly sequencing status

Human: Sub region UNPL_10 (TPF updated: 2013-07-04)

TPF

# Clone ext/Contig Clone int Acc/Fin
1
Hschr10_ctg1_UNLOCALIZED
ABBA01020697
ABBA01020697.1
finished
  GAP (type-2) length 20 bps    
3
Hschr10_ctg1_UNLOCALIZED
ABBA01020698
ABBA01020698.1
finished
  GAP (type-2) length 2921 bps    
5
Hschr10_ctg1_UNLOCALIZED
ABBA01020699
ABBA01020699.1
finished
  GAP (type-2) length 114 bps    
7
Hschr10_ctg1_UNLOCALIZED
ABBA01020700
ABBA01020700.1
finished
  GAP (type-2) length 2429 bps    
9
Hschr10_ctg1_UNLOCALIZED
ABBA01020701
ABBA01020701.1
finished
  GAP (type-2) length 20 bps    
11
Hschr10_ctg1_UNLOCALIZED
ABBA01020702
ABBA01020702.1
finished
  GAP (type-2) length 3390 bps    
13
Hschr10_ctg1_UNLOCALIZED
ABBA01020703
ABBA01020703.1
finished
  GAP (type-2) length 20 bps    
15
Hschr10_ctg1_UNLOCALIZED
ABBA01020704
ABBA01020704.1
finished
  GAP (type-2) length 4422 bps    
17
Hschr10_ctg1_UNLOCALIZED
ABBA01020705
ABBA01020705.1
finished
  GAP (type-2) length 5148 bps    
19
Hschr10_ctg1_UNLOCALIZED
ABBA01020706
ABBA01020706.1
finished
  GAP (type-2) length 20 bps    
21
Hschr10_ctg1_UNLOCALIZED
ABBA01020707
ABBA01020707.1
finished
  GAP (type-2) length 98 bps    
23
Hschr10_ctg1_UNLOCALIZED
ABBA01020708
ABBA01020708.1
finished
  GAP (type-2) length 20 bps    
25
Hschr10_ctg1_UNLOCALIZED
ABBA01020709
ABBA01020709.1
finished
  GAP (type-2) length 445 bps    
27
Hschr10_ctg1_UNLOCALIZED
ABBA01020710
ABBA01020710.1
finished
  GAP (type-2) length 20 bps    
29
Hschr10_ctg1_UNLOCALIZED
ABBA01020711
ABBA01020711.1
finished
  GAP (type-2) length 20 bps    
31
Hschr10_ctg1_UNLOCALIZED
ABBA01020712
ABBA01020712.1
finished
  GAP (type-2) length 1121 bps    
33
Hschr10_ctg1_UNLOCALIZED
ABBA01020713
ABBA01020713.1
finished
  GAP (type-2) length 2265 bps    
35
Hschr10_ctg1_UNLOCALIZED
ABBA01020714
ABBA01020714.1
finished
  GAP (type-2) length 20 bps    
37
Hschr10_ctg1_UNLOCALIZED
ABBA01020715
ABBA01020715.1
finished
  GAP (type-2) length 1210 bps    
39
Hschr10_ctg1_UNLOCALIZED
ABBA01020716
ABBA01020716.1
finished
  GAP (type-2) length 218 bps    
41
Hschr10_ctg1_UNLOCALIZED
ABBA01020717
ABBA01020717.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 1625 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 ABBA01020697.1 1 1625 +
1626 1645 2 N 20 contig yes # PAIRED ENDS
1646 11408 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 ABBA01020698.1 1 9763 +
11409 14329 4 N 2921 contig yes # PAIRED ENDS
14330 19427 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 ABBA01020699.1 1 5098 +
19428 19541 6 N 114 contig yes # PAIRED ENDS
19542 21064 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 ABBA01020700.1 1 1523 +
21065 23493 8 N 2429 contig yes # PAIRED ENDS
23494 29231 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 ABBA01020701.1 1 5738 +
29232 29251 10 N 20 contig yes # PAIRED ENDS
29252 30593 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 ABBA01020702.1 1 1342 +
30594 33983 12 N 3390 contig yes # PAIRED ENDS
33984 37850 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 ABBA01020703.1 1 3867 +
37851 37870 14 N 20 contig yes # PAIRED ENDS
37871 39247 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 ABBA01020704.1 1 1377 -
39248 43669 16 N 4422 contig yes # PAIRED ENDS
43670 46247 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 ABBA01020705.1 1 2578 +
46248 51395 18 N 5148 contig yes # PAIRED ENDS
51396 66010 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 ABBA01020706.1 1 14615 +
66011 66030 20 N 20 contig yes # PAIRED ENDS
66031 139386 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 ABBA01020707.1 1 73356 +
139387 139484 22 N 98 contig yes # PAIRED ENDS
139485 157311 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 ABBA01020708.1 1 17827 +
157312 157331 24 N 20 contig yes # PAIRED ENDS
157332 226445 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 ABBA01020709.1 1 69114 +
226446 226890 26 N 445 contig yes # PAIRED ENDS
226891 294977 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 ABBA01020710.1 1 68087 +
294978 294997 28 N 20 contig yes # PAIRED ENDS
294998 298232 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 ABBA01020711.1 1 3235 -
298233 298252 30 N 20 contig yes # PAIRED ENDS
298253 353904 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 ABBA01020712.1 1 55652 +
353905 355025 32 N 1121 contig yes # PAIRED ENDS
355026 357367 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 ABBA01020713.1 1 2342 -
357368 359632 34 N 2265 contig yes # PAIRED ENDS
359633 381950 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 ABBA01020714.1 1 22318 -
381951 381970 36 N 20 contig yes # PAIRED ENDS
381971 396102 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 ABBA01020715.1 1 14132 -
396103 397312 38 N 1210 contig yes # PAIRED ENDS
397313 406131 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 ABBA01020716.1 1 8819 -
406132 406349 40 N 218 contig yes # PAIRED ENDS
406350 716511 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 ABBA01020717.1 1 310162 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1
Hschr10_ctg1_UNLOCALIZED
ABBA01020697
-
-
ABBA01020697.1
finished
1625 -        
  GAP (type-2) length 20 bps                  
3
Hschr10_ctg1_UNLOCALIZED
ABBA01020698
-
-
ABBA01020698.1
finished
9763 -        
  GAP (type-2) length 2921 bps                  
5
Hschr10_ctg1_UNLOCALIZED
ABBA01020699
-
-
ABBA01020699.1
finished
5098 -        
  GAP (type-2) length 114 bps                  
7
Hschr10_ctg1_UNLOCALIZED
ABBA01020700
-
-
ABBA01020700.1
finished
1523 -        
  GAP (type-2) length 2429 bps                  
9
Hschr10_ctg1_UNLOCALIZED
ABBA01020701
-
-
ABBA01020701.1
finished
5738 -        
  GAP (type-2) length 20 bps                  
11
Hschr10_ctg1_UNLOCALIZED
ABBA01020702
-
-
ABBA01020702.1
finished
1342 -        
  GAP (type-2) length 3390 bps                  
13
Hschr10_ctg1_UNLOCALIZED
ABBA01020703
-
-
ABBA01020703.1
finished
3867 -        
  GAP (type-2) length 20 bps                  
15
Hschr10_ctg1_UNLOCALIZED
ABBA01020704
-
-
ABBA01020704.1
finished
1377 -        
  GAP (type-2) length 4422 bps                  
17
Hschr10_ctg1_UNLOCALIZED
ABBA01020705
-
-
ABBA01020705.1
finished
2578 -        
  GAP (type-2) length 5148 bps                  
19
Hschr10_ctg1_UNLOCALIZED
ABBA01020706
-
-
ABBA01020706.1
finished
14615 -        
  GAP (type-2) length 20 bps                  
21
Hschr10_ctg1_UNLOCALIZED
ABBA01020707
-
-
ABBA01020707.1
finished
73356 -        
  GAP (type-2) length 98 bps                  
23
Hschr10_ctg1_UNLOCALIZED
ABBA01020708
-
-
ABBA01020708.1
finished
17827 -        
  GAP (type-2) length 20 bps                  
25
Hschr10_ctg1_UNLOCALIZED
ABBA01020709
-
-
ABBA01020709.1
finished
69114 -        
  GAP (type-2) length 445 bps                  
27
Hschr10_ctg1_UNLOCALIZED
ABBA01020710
-
-
ABBA01020710.1
finished
68087 -        
  GAP (type-2) length 20 bps                  
29
Hschr10_ctg1_UNLOCALIZED
ABBA01020711
-
-
ABBA01020711.1
finished
3235 -        
  GAP (type-2) length 20 bps                  
31
Hschr10_ctg1_UNLOCALIZED
ABBA01020712
-
-
ABBA01020712.1
finished
55652 -        
  GAP (type-2) length 1121 bps                  
33
Hschr10_ctg1_UNLOCALIZED
ABBA01020713
-
-
ABBA01020713.1
finished
2342 -        
  GAP (type-2) length 2265 bps                  
35
Hschr10_ctg1_UNLOCALIZED
ABBA01020714
-
-
ABBA01020714.1
finished
22318 -        
  GAP (type-2) length 20 bps                  
37
Hschr10_ctg1_UNLOCALIZED
ABBA01020715
-
-
ABBA01020715.1
finished
14132 -        
  GAP (type-2) length 1210 bps                  
39
Hschr10_ctg1_UNLOCALIZED
ABBA01020716
-
-
ABBA01020716.1
finished
8819 -        
  GAP (type-2) length 218 bps                  
41
Hschr10_ctg1_UNLOCALIZED
ABBA01020717
-
-
ABBA01020717.1
finished
310162 -        

Statistics

Clone Summary

Number of gaps
20
Gap types
type-2
20
Total clones
21
Clone HTGS Phases
finished
21
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
692,570
Total finished length of fin clones w/o overlap
692,570
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
692,570
Total finished length of fin+unfin clones w/o overlap
692,570

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Other links

* quick link - http://q.sanger.ac.uk/0j4paqn9