ChromoView - clone / Assembly sequencing status

Human: Sub region UNPL_22 (TPF updated: 2014-04-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 B659M11
Hschr22_UNLOCALIZED_ctg1
B659M11
AC023491.23
finished
  GAP (type-3) length unknown    
3 17A8
Hschr22_UNLOCALIZED_ctg2
17A8
AC093091.5
finished
  GAP (type-3) length unknown    
5 RP11-164K15
Hschr22_UNLOCALIZED_ctg3
bA164K15
EPN details
AL353644.34
finished
  GAP (type-3) length unknown    
7 B48
Hschr22_UNLOCALIZED_ctg4
B48
AC007325.51
finished
  GAP (type-3) length unknown    
9 74C1
Hschr22_UNLOCALIZED_ctg5
74C1
AC103582.17
finished
  GAP (type-3) length unknown    
11
Hschr22_UNLOCALIZED_ctg6
ABBA01016769
ABBA01016769.1
finished
12
Hschr22_UNLOCALIZED_ctg6
AEKP01210507
AEKP01210507.1
finished
  GAP (type-2) length 493 bps    
14
Hschr22_UNLOCALIZED_ctg6
AUXG01000527
AUXG01000527.1
finished
  GAP (type-2) length 25 bps    
16
Hschr22_UNLOCALIZED_ctg6
AUXG01000526
AUXG01000526.1
finished
  GAP (type-2) length 25 bps    
18
Hschr22_UNLOCALIZED_ctg6
AUXG01000525
AUXG01000525.1
finished
  GAP (type-2) length 3201 bps    
20
Hschr22_UNLOCALIZED_ctg6
AUXG01000524
AUXG01000524.1
finished
  GAP (type-2) length 2175 bps    
22
Hschr22_UNLOCALIZED_ctg6
AUXG01000523
AUXG01000523.1
finished
  GAP (type-2) length 2829 bps    
24
Hschr22_UNLOCALIZED_ctg6
AUXG01000522
AUXG01000522.1
finished
  GAP (type-2) length 3535 bps    
26
Hschr22_UNLOCALIZED_ctg6
AUXG01000521
AUXG01000521.1
finished
  GAP (type-3) length unknown    
28
Hschr22_UNLOCALIZED_ctg7
AUXG01000280
AUXG01000280.1
finished
  GAP (type-2) length 411 bps    
30
Hschr22_UNLOCALIZED_ctg7
AUXG01000281
AUXG01000281.1
finished
  GAP (type-3) length unknown    
32
Hschr22_UNLOCALIZED_ctg8
AUXG01000282
AUXG01000282.1
finished
  GAP (type-2) length 879 bps    
34
Hschr22_UNLOCALIZED_ctg8
AUXG01000283
AUXG01000283.1
finished
  GAP (type-2) length 189 bps    
36
Hschr22_UNLOCALIZED_ctg8
AUXG01000284
AUXG01000284.1
finished
  GAP (type-2) length 113 bps    
38
Hschr22_UNLOCALIZED_ctg8
AUXG01000285
AUXG01000285.1
finished
  GAP (type-2) length 25 bps    
40
Hschr22_UNLOCALIZED_ctg8
AUXG01000286
AUXG01000286.1
finished
  GAP (type-2) length 76 bps    
42
Hschr22_UNLOCALIZED_ctg8
AUXG01000287
AUXG01000287.1
finished
  GAP (type-2) length 2248 bps    
44
Hschr22_UNLOCALIZED_ctg8
AUXG01000288
AUXG01000288.1
finished
  GAP (type-2) length 25 bps    
46
Hschr22_UNLOCALIZED_ctg8
AUXG01000289
AUXG01000289.1
finished
  GAP (type-3) length unknown    
48
Hschr22_UNLOCALIZED_ctg9
AUXG01000290
AUXG01000290.1
finished
  GAP (type-2) length 320 bps    
50
Hschr22_UNLOCALIZED_ctg9
AUXG01000291
AUXG01000291.1
finished
  GAP (type-2) length 1217 bps    
52
Hschr22_UNLOCALIZED_ctg9
AUXG01000292
AUXG01000292.1
finished
  GAP (type-2) length 25 bps    
54
Hschr22_UNLOCALIZED_ctg9
AUXG01000293
AUXG01000293.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 150754 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC023491.23 1 150754 +
150755 200754 2 N 50000 contig no
200755 242297 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AC093091.5 1 41543 +
242298 292297 4 N 50000 contig no
292298 472069 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AL353644.34 1 179772 +
472070 522069 6 N 50000 contig no
522070 687119 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC007325.51 1 165050 +
687120 737119 8 N 50000 contig no
737120 785916 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC103582.17 1 48797 +
785917 835916 10 N 50000 contig no
835917 884184 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 ABBA01016769.1 1 48268 -
884185 893751 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AEKP01210507.1 16248 25814 +
893752 894244 13 N 493 contig yes # ALIGN GENUS
894245 951969 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 AUXG01000527.1 1 57725 -
951970 951994 15 N 25 contig yes # PAIRED ENDS
951995 992154 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 AUXG01000526.1 1 40160 -
992155 992179 17 N 25 contig yes # PAIRED ENDS
992180 994699 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 AUXG01000525.1 1 2520 -
994700 997900 19 N 3201 contig yes # PAIRED ENDS
997901 999808 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 AUXG01000524.1 1 1908 -
999809 1001983 21 N 2175 contig yes # PAIRED ENDS
1001984 1003834 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 AUXG01000523.1 1 1851 -
1003835 1006663 23 N 2829 contig yes # PAIRED ENDS
1006664 1011641 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 AUXG01000522.1 1 4978 -
1011642 1015176 25 N 3535 contig yes # PAIRED ENDS
1015177 1017836 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 AUXG01000521.1 1 2660 -
1017837 1067836 27 N 50000 contig no
1067837 1149025 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 28 AUXG01000280.1 1 81189 +
1149026 1149436 29 N 411 contig yes # PAIRED ENDS
1149437 1171674 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 AUXG01000281.1 1 22238 +
1171675 1221674 31 N 50000 contig no
1221675 1226975 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 AUXG01000282.1 1 5301 +
1226976 1227854 33 N 879 contig yes # PAIRED ENDS
1227855 1289680 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 34 AUXG01000283.1 1 61826 +
1289681 1289869 35 N 189 contig yes # PAIRED ENDS
1289870 1300686 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 36 AUXG01000284.1 1 10817 +
1300687 1300799 37 N 113 contig yes # PAIRED ENDS
1300800 1308365 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 38 AUXG01000285.1 1 7566 +
1308366 1308390 39 N 25 contig yes # PAIRED ENDS
1308391 1309459 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 AUXG01000286.1 1 1069 +
1309460 1309535 41 N 76 contig yes # PAIRED ENDS
1309536 1313226 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 42 AUXG01000287.1 1 3691 +
1313227 1315474 43 N 2248 contig yes # PAIRED ENDS
1315475 1316963 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 AUXG01000288.1 1 1489 +
1316964 1316988 45 N 25 contig yes # PAIRED ENDS
1316989 1321049 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 46 AUXG01000289.1 1 4061 +
1321050 1371049 47 N 50000 contig no
1371050 1384856 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 48 AUXG01000290.1 1 13807 +
1384857 1385176 49 N 320 contig yes # PAIRED ENDS
1385177 1408234 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 50 AUXG01000291.1 1 23058 +
1408235 1409451 51 N 1217 contig yes # PAIRED ENDS
1409452 1412900 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 AUXG01000292.1 1 3449 +
1412901 1412925 53 N 25 contig yes # PAIRED ENDS
1412926 1445034 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 AUXG01000293.1 1 32109 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 B659M11
Hschr22_UNLOCALIZED_ctg1
B659M11
-
-
AC023491.23
finished
150754 -        
  GAP (type-3) length unknown                  
3 17A8
Hschr22_UNLOCALIZED_ctg2
17A8
-
-
AC093091.5
finished
41543 -        
  GAP (type-3) length unknown                  
5 RP11-164K15
Hschr22_UNLOCALIZED_ctg3
bA164K15
EPN details
Analysed
25-JUL-07
AL353644.34
finished
179772 RPCI-11.1        
  GAP (type-3) length unknown                  
7 B48
Hschr22_UNLOCALIZED_ctg4
B48
-
-
AC007325.51
finished
165050 -        
  GAP (type-3) length unknown                  
9 74C1
Hschr22_UNLOCALIZED_ctg5
74C1
-
-
AC103582.17
finished
48797 -        
  GAP (type-3) length unknown                  
11
Hschr22_UNLOCALIZED_ctg6
ABBA01016769
-
-
ABBA01016769.1
finished
48268 - 5' / 5'
1 / 16248
- / -
16235
0.39
Identified
2014-04-09
fetch_ncbi...
humpub
 
12
Hschr22_UNLOCALIZED_ctg6
AEKP01210507
-
-
AEKP01210507.1
finished
25814 -        
  GAP (type-2) length 493 bps                  
14
Hschr22_UNLOCALIZED_ctg6
AUXG01000527
-
-
AUXG01000527.1
finished
57725 -        
  GAP (type-2) length 25 bps                  
16
Hschr22_UNLOCALIZED_ctg6
AUXG01000526
-
-
AUXG01000526.1
finished
40160 -        
  GAP (type-2) length 25 bps                  
18
Hschr22_UNLOCALIZED_ctg6
AUXG01000525
-
-
AUXG01000525.1
finished
2520 -        
  GAP (type-2) length 3201 bps                  
20
Hschr22_UNLOCALIZED_ctg6
AUXG01000524
-
-
AUXG01000524.1
finished
1908 -        
  GAP (type-2) length 2175 bps                  
22
Hschr22_UNLOCALIZED_ctg6
AUXG01000523
-
-
AUXG01000523.1
finished
1851 -        
  GAP (type-2) length 2829 bps                  
24
Hschr22_UNLOCALIZED_ctg6
AUXG01000522
-
-
AUXG01000522.1
finished
4978 -        
  GAP (type-2) length 3535 bps                  
26
Hschr22_UNLOCALIZED_ctg6
AUXG01000521
-
-
AUXG01000521.1
finished
2660 -        
  GAP (type-3) length unknown                  
28
Hschr22_UNLOCALIZED_ctg7
AUXG01000280
-
-
AUXG01000280.1
finished
81189 -        
  GAP (type-2) length 411 bps                  
30
Hschr22_UNLOCALIZED_ctg7
AUXG01000281
-
-
AUXG01000281.1
finished
22238 -        
  GAP (type-3) length unknown                  
32
Hschr22_UNLOCALIZED_ctg8
AUXG01000282
-
-
AUXG01000282.1
finished
5301 -        
  GAP (type-2) length 879 bps                  
34
Hschr22_UNLOCALIZED_ctg8
AUXG01000283
-
-
AUXG01000283.1
finished
61826 -        
  GAP (type-2) length 189 bps                  
36
Hschr22_UNLOCALIZED_ctg8
AUXG01000284
-
-
AUXG01000284.1
finished
10817 -        
  GAP (type-2) length 113 bps                  
38
Hschr22_UNLOCALIZED_ctg8
AUXG01000285
-
-
AUXG01000285.1
finished
7566 -        
  GAP (type-2) length 25 bps                  
40
Hschr22_UNLOCALIZED_ctg8
AUXG01000286
-
-
AUXG01000286.1
finished
1069 -        
  GAP (type-2) length 76 bps                  
42
Hschr22_UNLOCALIZED_ctg8
AUXG01000287
-
-
AUXG01000287.1
finished
3691 -        
  GAP (type-2) length 2248 bps                  
44
Hschr22_UNLOCALIZED_ctg8
AUXG01000288
-
-
AUXG01000288.1
finished
1489 -        
  GAP (type-2) length 25 bps                  
46
Hschr22_UNLOCALIZED_ctg8
AUXG01000289
-
-
AUXG01000289.1
finished
4061 -        
  GAP (type-3) length unknown                  
48
Hschr22_UNLOCALIZED_ctg9
AUXG01000290
-
-
AUXG01000290.1
finished
13807 -        
  GAP (type-2) length 320 bps                  
50
Hschr22_UNLOCALIZED_ctg9
AUXG01000291
-
-
AUXG01000291.1
finished
23058 -        
  GAP (type-2) length 1217 bps                  
52
Hschr22_UNLOCALIZED_ctg9
AUXG01000292
-
-
AUXG01000292.1
finished
3449 -        
  GAP (type-2) length 25 bps                  
54
Hschr22_UNLOCALIZED_ctg9
AUXG01000293
-
-
AUXG01000293.1
finished
32109 -        

Statistics

Clone Summary

Number of gaps
26
Gap types
type-2
18
type-3
8
Total clones
28
Clone HTGS Phases
finished
28
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
16,235
Total finished length of fin clones w/ overlap
1,043,470
Total finished length of fin clones w/o overlap
1,027,235
Total overlap length of fin+unfin clones
16,235
Total finished length of fin+unfin clones w/ overlap
1,043,470
Total finished length of fin+unfin clones w/o overlap
1,027,235

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Other links

* quick link - http://q.sanger.ac.uk/jv6u74fb