ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__UNPL__X (TPF updated: 2014-11-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1
MmchrX_random_ctg2
CAAA01165726
CAAA01165726.1
finished
  GAP (type-2) length 1986 bps    
3
MmchrX_random_ctg2
CAAA01019129
CAAA01019129.1
finished
  GAP (type-2) length 100 bps    
5
MmchrX_random_ctg2
CAAA01019127
CAAA01019127.1
finished
  GAP (type-2) length 100 bps    
7
MmchrX_random_ctg2
CAAA01174252
CAAA01174252.1
finished
  GAP (type-2) length 100 bps    
9
MmchrX_random_ctg2
CAAA01019125
CAAA01019125.1
finished
  GAP (type-2) length 347 bps    
11
MmchrX_random_ctg2
CAAA01122338
CAAA01122338.1
finished
  GAP (type-2) length 696 bps    
13
MmchrX_random_ctg2
CAAA01122331
CAAA01122331.1
finished
  GAP (type-2) length 100 bps    
15
MmchrX_random_ctg2
CAAA01173250
CAAA01173250.1
finished
  GAP (type-2) length 1043 bps    
17
MmchrX_random_ctg2
CAAA01174251
CAAA01174251.1
finished
  GAP (type-2) length 100 bps    
19
MmchrX_random_ctg2
CAAA01142147
CAAA01142147.1
finished
  GAP (type-2) length 100 bps    
21
MmchrX_random_ctg2
CAAA01174935
CAAA01174935.1
finished
  GAP (type-2) length 898 bps    
23
MmchrX_random_ctg2
CAAA01117109
CAAA01117109.1
finished
  GAP (type-2) length 100 bps    
25
MmchrX_random_ctg2
CAAA01184943
CAAA01184943.1
finished
  GAP (type-2) length 100 bps    
27
MmchrX_random_ctg2
CAAA01019123
CAAA01019123.1
finished
  GAP (type-2) length 100 bps    
29
MmchrX_random_ctg2
CAAA01019121
CAAA01019121.1
finished
  GAP (type-2) length 5598 bps    
31
MmchrX_random_ctg2
CAAA01019119
CAAA01019119.1
finished
  GAP (type-2) length 100 bps    
33
MmchrX_random_ctg2
CAAA01019117
CAAA01019117.1
finished
  GAP (type-2) length 252 bps    
35
MmchrX_random_ctg2
CAAA01202028
CAAA01202028.1
finished
  GAP (type-2) length 1759 bps    
37
MmchrX_random_ctg2
CAAA01224636
CAAA01224636.1
finished
  GAP (type-2) length 7662 bps    
39
MmchrX_random_ctg2
CAAA01137825
CAAA01137825.1
finished
  GAP (type-2) length 100 bps    
41
MmchrX_random_ctg2
CAAA01147701
CAAA01147701.1
finished
  GAP (type-2) length 100 bps    
43
MmchrX_random_ctg2
CAAA01101973
CAAA01101973.1
finished
  GAP (type-2) length 100 bps    
45
MmchrX_random_ctg2
CAAA01187194
CAAA01187194.1
finished
  GAP (type-2) length 100 bps    
47
MmchrX_random_ctg2
CAAA01168943
CAAA01168943.1
finished
  GAP (type-2) length 1079 bps    
49
MmchrX_random_ctg2
CAAA01141877
CAAA01141877.1
finished
  GAP (type-2) length 100 bps    
51
MmchrX_random_ctg2
CAAA01183048
CAAA01183048.1
finished
  GAP (type-2) length 100 bps    
53
MmchrX_random_ctg2
CAAA01120074
CAAA01120074.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 39696 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CAAA01165726.1 1 39696 +
39697 41682 2 N 1986 contig yes # PAIRED ENDS
41683 45891 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CAAA01019129.1 1 4209 +
45892 45991 4 N 100 contig yes # PAIRED ENDS
45992 51187 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CAAA01019127.1 1 5196 +
51188 51287 6 N 100 contig yes # PAIRED ENDS
51288 74630 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 CAAA01174252.1 1 23343 +
74631 74730 8 N 100 contig yes # PAIRED ENDS
74731 110528 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CAAA01019125.1 1 35798 +
110529 110875 10 N 347 contig yes # PAIRED ENDS
110876 130577 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 CAAA01122338.1 1 19702 +
130578 131273 12 N 696 contig yes # PAIRED ENDS
131274 133818 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 CAAA01122331.1 1 2545 +
133819 133918 14 N 100 contig yes # PAIRED ENDS
133919 136024 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 CAAA01173250.1 1 2106 +
136025 137067 16 N 1043 contig yes # PAIRED ENDS
137068 157510 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 CAAA01174251.1 1 20443 +
157511 157610 18 N 100 contig yes # PAIRED ENDS
157611 170065 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 CAAA01142147.1 1 12455 +
170066 170165 20 N 100 contig yes # PAIRED ENDS
170166 171235 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 CAAA01174935.1 1 1070 +
171236 172133 22 N 898 contig yes # PAIRED ENDS
172134 194756 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 CAAA01117109.1 1 22623 +
194757 194856 24 N 100 contig yes # PAIRED ENDS
194857 198729 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 CAAA01184943.1 1 3873 +
198730 198829 26 N 100 contig yes # PAIRED ENDS
198830 202322 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 CAAA01019123.1 1 3493 +
202323 202422 28 N 100 contig yes # PAIRED ENDS
202423 207113 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CAAA01019121.1 1 4691 +
207114 212711 30 N 5598 contig yes # PAIRED ENDS
212712 235307 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 CAAA01019119.1 1 22596 +
235308 235407 32 N 100 contig yes # PAIRED ENDS
235408 236978 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 CAAA01019117.1 1 1571 +
236979 237230 34 N 252 contig yes # PAIRED ENDS
237231 240416 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 CAAA01202028.1 1 3186 +
240417 242175 36 N 1759 contig yes # PAIRED ENDS
242176 242796 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 CAAA01224636.1 1 621 +
242797 250458 38 N 7662 contig yes # PAIRED ENDS
250459 287720 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 CAAA01137825.1 1 37262 +
287721 287820 40 N 100 contig yes # PAIRED ENDS
287821 292278 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 CAAA01147701.1 1 4458 +
292279 292378 42 N 100 contig yes # PAIRED ENDS
292379 296105 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 43 CAAA01101973.1 1 3727 +
296106 296205 44 N 100 contig yes # PAIRED ENDS
296206 303372 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 CAAA01187194.1 1 7167 +
303373 303472 46 N 100 contig yes # PAIRED ENDS
303473 305270 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 CAAA01168943.1 1 1798 +
305271 306349 48 N 1079 contig yes # PAIRED ENDS
306350 310658 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 49 CAAA01141877.1 1 4309 +
310659 310758 50 N 100 contig yes # PAIRED ENDS
310759 331024 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 51 CAAA01183048.1 1 20266 +
331025 331124 52 N 100 contig yes # PAIRED ENDS
331125 336933 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 53 CAAA01120074.1 1 5809 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1
MmchrX_random_ctg2
CAAA01165726
-
-
CAAA01165726.1
finished
39696 -        
  GAP (type-2) length 1986 bps                  
3
MmchrX_random_ctg2
CAAA01019129
-
-
CAAA01019129.1
finished
4209 -        
  GAP (type-2) length 100 bps                  
5
MmchrX_random_ctg2
CAAA01019127
-
-
CAAA01019127.1
finished
5196 -        
  GAP (type-2) length 100 bps                  
7
MmchrX_random_ctg2
CAAA01174252
-
-
CAAA01174252.1
finished
23343 -        
  GAP (type-2) length 100 bps                  
9
MmchrX_random_ctg2
CAAA01019125
-
-
CAAA01019125.1
finished
35798 -        
  GAP (type-2) length 347 bps                  
11
MmchrX_random_ctg2
CAAA01122338
-
-
CAAA01122338.1
finished
19702 -        
  GAP (type-2) length 696 bps                  
13
MmchrX_random_ctg2
CAAA01122331
-
-
CAAA01122331.1
finished
2545 -        
  GAP (type-2) length 100 bps                  
15
MmchrX_random_ctg2
CAAA01173250
-
-
CAAA01173250.1
finished
2106 -        
  GAP (type-2) length 1043 bps                  
17
MmchrX_random_ctg2
CAAA01174251
-
-
CAAA01174251.1
finished
20443 -        
  GAP (type-2) length 100 bps                  
19
MmchrX_random_ctg2
CAAA01142147
-
-
CAAA01142147.1
finished
12455 -        
  GAP (type-2) length 100 bps                  
21
MmchrX_random_ctg2
CAAA01174935
-
-
CAAA01174935.1
finished
1070 -        
  GAP (type-2) length 898 bps                  
23
MmchrX_random_ctg2
CAAA01117109
-
-
CAAA01117109.1
finished
22623 -        
  GAP (type-2) length 100 bps                  
25
MmchrX_random_ctg2
CAAA01184943
-
-
CAAA01184943.1
finished
3873 -        
  GAP (type-2) length 100 bps                  
27
MmchrX_random_ctg2
CAAA01019123
-
-
CAAA01019123.1
finished
3493 -        
  GAP (type-2) length 100 bps                  
29
MmchrX_random_ctg2
CAAA01019121
-
-
CAAA01019121.1
finished
4691 -        
  GAP (type-2) length 5598 bps                  
31
MmchrX_random_ctg2
CAAA01019119
-
-
CAAA01019119.1
finished
22596 -        
  GAP (type-2) length 100 bps                  
33
MmchrX_random_ctg2
CAAA01019117
-
-
CAAA01019117.1
finished
1571 -        
  GAP (type-2) length 252 bps                  
35
MmchrX_random_ctg2
CAAA01202028
-
-
CAAA01202028.1
finished
3186 -        
  GAP (type-2) length 1759 bps                  
37
MmchrX_random_ctg2
CAAA01224636
-
-
CAAA01224636.1
finished
621 -        
  GAP (type-2) length 7662 bps                  
39
MmchrX_random_ctg2
CAAA01137825
-
-
CAAA01137825.1
finished
37262 -        
  GAP (type-2) length 100 bps                  
41
MmchrX_random_ctg2
CAAA01147701
-
-
CAAA01147701.1
finished
4458 -        
  GAP (type-2) length 100 bps                  
43
MmchrX_random_ctg2
CAAA01101973
-
-
CAAA01101973.1
finished
3727 -        
  GAP (type-2) length 100 bps                  
45
MmchrX_random_ctg2
CAAA01187194
-
-
CAAA01187194.1
finished
7167 -        
  GAP (type-2) length 100 bps                  
47
MmchrX_random_ctg2
CAAA01168943
-
-
CAAA01168943.1
finished
1798 -        
  GAP (type-2) length 1079 bps                  
49
MmchrX_random_ctg2
CAAA01141877
-
-
CAAA01141877.1
finished
4309 -        
  GAP (type-2) length 100 bps                  
51
MmchrX_random_ctg2
CAAA01183048
-
-
CAAA01183048.1
finished
20266 -        
  GAP (type-2) length 100 bps                  
53
MmchrX_random_ctg2
CAAA01120074
-
-
CAAA01120074.1
finished
5809 -        

Statistics

Clone Summary

Number of gaps
26
Gap types
type-2
26
Total clones
27
Clone HTGS Phases
finished
27
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
314,013
Total finished length of fin clones w/o overlap
314,013
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
314,013
Total finished length of fin+unfin clones w/o overlap
314,013

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Other links

* quick link - http://q.sanger.ac.uk/7hqqjv36