ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__UNPL__4 (TPF updated: 2014-04-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1
Mmchr4un_ctg1
CAAA01118379
CAAA01118379.1
finished
  GAP (type-2) length 114 bps    
3
Mmchr4un_ctg1
CAAA01131237
CAAA01131237.1
finished
  GAP (type-2) length 100 bps    
5
Mmchr4un_ctg1
CAAA01125276
CAAA01125276.1
finished
  GAP (type-2) length 100 bps    
7
Mmchr4un_ctg1
CAAA01118383
CAAA01118383.1
finished
  GAP (type-2) length 100 bps    
9
Mmchr4un_ctg1
CAAA01205742
CAAA01205742.1
finished
  GAP (type-2) length 100 bps    
11
Mmchr4un_ctg1
CAAA01185843
CAAA01185843.1
finished
  GAP (type-2) length 266 bps    
13
Mmchr4un_ctg1
CAAA01124250
CAAA01124250.1
finished
  GAP (type-2) length 100 bps    
15
Mmchr4un_ctg1
CAAA01168192
CAAA01168192.1
finished
  GAP (type-2) length 1992 bps    
17
Mmchr4un_ctg1
CAAA01211473
CAAA01211473.1
finished
  GAP (type-2) length 100 bps    
19
Mmchr4un_ctg1
CAAA01119962
CAAA01119962.1
finished
  GAP (type-3) length unknown    
21
Mmchr4un_ctg2
CAAA01174334
CAAA01174334.1
finished
  GAP (type-3) length unknown    
23 RP23-355O11
Mmchr4un_ctg3
bM355O11
AC087559.69
finished
  GAP (type-3) length unknown    
25 RP23-18C19
Mmchr4un_ctg4
bM18C19
EPN details
CR974586.23
finished
  GAP (type-3) length unknown    
27 RP24-388E17
Mmchr4un_ctg5
bN388E17
EPN details
CT868723.17
finished
  GAP (type-3) length unknown    
29
Mmchr4un_ctg6
CAAA01147332
CAAA01147332.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 4442 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CAAA01118379.1 1 4442 +
4443 4556 2 N 114 contig yes # PAIRED ENDS
4557 11927 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CAAA01131237.1 1 7371 +
11928 12027 4 N 100 contig yes # PAIRED ENDS
12028 24450 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CAAA01125276.1 1 12423 +
24451 24550 6 N 100 contig yes # PAIRED ENDS
24551 43648 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 CAAA01118383.1 1 19098 +
43649 43748 8 N 100 contig yes # PAIRED ENDS
43749 45651 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CAAA01205742.1 1 1903 +
45652 45751 10 N 100 contig yes # PAIRED ENDS
45752 47251 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 CAAA01185843.1 1 1500 +
47252 47517 12 N 266 contig yes # PAIRED ENDS
47518 55194 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 CAAA01124250.1 1 7677 +
55195 55294 14 N 100 contig yes # PAIRED ENDS
55295 58192 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 CAAA01168192.1 1 2898 +
58193 60184 16 N 1992 contig yes # PAIRED ENDS
60185 61747 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 CAAA01211473.1 1 1563 +
61748 61847 18 N 100 contig yes # PAIRED ENDS
61848 66673 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 CAAA01119962.1 1 4826 +
66674 116673 20 N 50000 contig no
116674 131618 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 CAAA01174334.1 1 14945 +
131619 181618 22 N 50000 contig no
181619 409584 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 AC087559.69 1 227966 +
409585 459584 24 N 50000 contig no
459585 667552 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 CR974586.23 1 207968 +
667553 717552 26 N 50000 contig no
717553 909457 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 CT868723.17 1 191905 +
909458 959457 28 N 50000 contig no
959458 961433 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CAAA01147332.1 1 1976 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1
Mmchr4un_ctg1
CAAA01118379
-
-
CAAA01118379.1
finished
4442 -        
  GAP (type-2) length 114 bps                  
3
Mmchr4un_ctg1
CAAA01131237
-
-
CAAA01131237.1
finished
7371 -        
  GAP (type-2) length 100 bps                  
5
Mmchr4un_ctg1
CAAA01125276
-
-
CAAA01125276.1
finished
12423 -        
  GAP (type-2) length 100 bps                  
7
Mmchr4un_ctg1
CAAA01118383
-
-
CAAA01118383.1
finished
19098 -        
  GAP (type-2) length 100 bps                  
9
Mmchr4un_ctg1
CAAA01205742
-
-
CAAA01205742.1
finished
1903 -        
  GAP (type-2) length 100 bps                  
11
Mmchr4un_ctg1
CAAA01185843
-
-
CAAA01185843.1
finished
1500 -        
  GAP (type-2) length 266 bps                  
13
Mmchr4un_ctg1
CAAA01124250
-
-
CAAA01124250.1
finished
7677 -        
  GAP (type-2) length 100 bps                  
15
Mmchr4un_ctg1
CAAA01168192
-
-
CAAA01168192.1
finished
2898 -        
  GAP (type-2) length 1992 bps                  
17
Mmchr4un_ctg1
CAAA01211473
-
-
CAAA01211473.1
finished
1563 -        
  GAP (type-2) length 100 bps                  
19
Mmchr4un_ctg1
CAAA01119962
-
-
CAAA01119962.1
finished
4826 -        
  GAP (type-3) length unknown                  
21
Mmchr4un_ctg2
CAAA01174334
-
-
CAAA01174334.1
finished
14945 -        
  GAP (type-3) length unknown                  
23 RP23-355O11
Mmchr4un_ctg3
bM355O11
-
-
AC087559.69
finished
227966 RPCI-23        
  GAP (type-3) length unknown                  
25 RP23-18C19
Mmchr4un_ctg4
bM18C19
EPN details
Submitted to EMBL
14-JAN-09
CR974586.23
finished
207968 RPCI-23        
  GAP (type-3) length unknown                  
27 RP24-388E17
Mmchr4un_ctg5
bN388E17
EPN details
Submitted to EMBL
14-JAN-09
CT868723.17
finished
191905 RPCI-24        
  GAP (type-3) length unknown                  
29
Mmchr4un_ctg6
CAAA01147332
-
-
CAAA01147332.1
finished
1976 -        

Statistics

Clone Summary

Number of gaps
14
Gap types
type-2
9
type-3
5
Total clones
15
Clone HTGS Phases
finished
15
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
708,461
Total finished length of fin clones w/o overlap
708,461
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
708,461
Total finished length of fin+unfin clones w/o overlap
708,461

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Other links

* quick link - http://q.sanger.ac.uk/q3m7jrw2