ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__17 (TPF updated: 2015-04-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP11-206C20
HSCHR17_6_CTG4
bA206C20
AC006070.1
finished
2 ABC8_000005705249_N4
HSCHR17_6_CTG4
ABC8_000005705249_N4
AC213246.1
finished
  GAP (type-3) length unknown    
4 RP11-1260E13
HSCHR17_2_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
5 DD0002TNONU_P17
HSCHR17_2_CTG1
CONTAINED
DD0002TNONU_P17
AC240137.3
finished
4 RP11-1260E13
HSCHR17_2_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
  GAP (type-3) length unknown    
7 CTB-39G8
HSCHR17_2_CTG5
bK39G8
AC003070.2
finished
8 CH17-41F14
HSCHR17_2_CTG5
bMO41F14
AC244207.2
finished
9 CH17-33G3
HSCHR17_2_CTG5
bMO33G3
AC243807.3
finished
10 CH17-169A24
HSCHR17_2_CTG5
bMO169A24
AC243621.2
finished
11 CH17-170H8
HSCHR17_2_CTG5
bMO170H8
AC243658.3
finished
12 CH17-124M20
HSCHR17_2_CTG5
bMO124M20
AC243899.3
finished
13 CH17-157L1
HSCHR17_2_CTG5
bMO157L1
AC243627.3
finished
14 CH17-202L17
HSCHR17_2_CTG5
bMO202L17
AC243659.3
finished
15 CH17-227A2
HSCHR17_2_CTG5
bMO227A2
AC243685.2
finished
16 CTC-480C19
HSCHR17_2_CTG5
bK480C19
AC015855.13
finished
  GAP (type-3) length unknown    
18 CH17-8C20
HSCHR17_10_CTG4
CONTAINER
bMO8C20
AC243829.3
finished
19 RP11-893G17
HSCHR17_10_CTG4
CONTAINED
bA893G17
AC131056.5
finished
18 CH17-8C20
HSCHR17_10_CTG4
CONTAINER
bMO8C20
AC243829.3
finished
  GAP (type-3) length unknown    
21 RP11-216P6
HSCHR17_3_CTG2
CONTAINER
bA216P6
AC015884.15
finished
22 ABC14-50178000L13
HSCHR17_3_CTG2
CONTAINED
f14A50178000L13
AC226497.2
finished
21 RP11-216P6
HSCHR17_3_CTG2
CONTAINER
bA216P6
AC015884.15
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 50725 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC006070.1 1 50725 +
50726 88070 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC213246.1 1 37345 -
88071 138070 3 N 50000 contig no
138071 218314 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC129507.10 1 80244 +
218315 246966 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC240137.3 1 28652 +
246967 301881 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC129507.10 106842 161756 +
301882 351881 7 N 50000 contig no
351882 459098 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC003070.2 1 107217 -
459099 598854 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC244207.2 85636 225391 +
598855 838224 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243807.3 1 239370 -
838225 1042177 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243621.2 39177 243129 +
1042178 1250498 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243658.3 15200 223520 +
1250499 1397802 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243899.3 1 147304 -
1397803 1460739 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243627.3 167929 230865 +
1460740 1588274 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243659.3 90045 217579 +
1588275 1728900 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243685.2 59895 200520 +
1728901 1777070 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC015855.13 48794 96963 +
1777071 1827070 18 N 50000 contig no
1827071 1949145 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC243829.3 1 122075 +
1949146 2142791 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC131056.5 1 193646 -
2142792 2166008 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC243829.3 214076 237292 +
2166009 2216008 22 N 50000 contig no
2216009 2302558 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC015884.15 1 86550 +
2302559 2336977 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC226497.2 1 34419 -
2336978 2424439 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC015884.15 120200 207661 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
4
Gap types
type-3
4
Total clones
18
Clone HTGS Phases
finished
18
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
755,559
Total finished length of fin clones w/ overlap
3,055,701
Total finished length of fin clones w/o overlap
2,300,142
Total overlap length of fin+unfin clones
755,559
Total finished length of fin+unfin clones w/ overlap
3,055,701
Total finished length of fin+unfin clones w/o overlap
2,300,142

Dovetails

# rank accession status length date
1 1 AC006070.1 unfinished 62,547 Fri, 17 Apr 2015 12:15
2 4 AC129507.10 unfinished 54,915 Fri, 17 Apr 2015 12:15
3 18 AC243829.3 unfinished 23,217 Fri, 17 Apr 2015 12:15
4 21 AC015884.15 unfinished 87,462 Fri, 17 Apr 2015 12:15

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* quick link - http://q.sanger.ac.uk/zsy2hk2h