ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__17 (TPF updated: 2014-09-17)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-206C20
HSCHR17_6_CTG4
bA206C20
AC006070.1
finished
2 ABC8_000005705249_N4
HSCHR17_6_CTG4
ABC8_000005705249_N4
AC213246.1
finished
  GAP (type-3) length unknown    
4 RP11-1260E13
HSCHR17_2_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
5 DD0002TNONU_P17
HSCHR17_2_CTG1
CONTAINED
DD0002TNONU_P17
AC240137.3
finished
4 RP11-1260E13
HSCHR17_2_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
  GAP (type-3) length unknown    
7 CTB-39G8
HSCHR17_2_CTG5
bK39G8
AC003070.2
finished
8 CH17-41F14
HSCHR17_2_CTG5
bMO41F14
AC244207.2
finished
9 CH17-33G3
HSCHR17_2_CTG5
bMO33G3
AC243807.3
finished
10 CH17-169A24
HSCHR17_2_CTG5
bMO169A24
AC243621.2
finished
11 CH17-170H8
HSCHR17_2_CTG5
bMO170H8
AC243658.3
finished
12 CH17-124M20
HSCHR17_2_CTG5
bMO124M20
AC243899.3
finished
13 CH17-157L1
HSCHR17_2_CTG5
bMO157L1
AC243627.3
finished
14 CH17-202L17
HSCHR17_2_CTG5
bMO202L17
AC243659.3
finished
15 CH17-227A2
HSCHR17_2_CTG5
bMO227A2
AC243685.2
finished
16 CTC-480C19
HSCHR17_2_CTG5
bK480C19
AC015855.13
finished
  GAP (type-3) length unknown    
18 CH17-8C20
HSCHR17_10_CTG4
CONTAINER
bMO8C20
AC243829.3
finished
19 RP11-893G17
HSCHR17_10_CTG4
CONTAINED
bA893G17
AC131056.5
finished
18 CH17-8C20
HSCHR17_10_CTG4
CONTAINER
bMO8C20
AC243829.3
finished
  GAP (type-3) length unknown    
21 RP11-216P6
HSCHR17_3_CTG2
CONTAINER
bA216P6
AC015884.15
finished
22 ABC14-50178000L13
HSCHR17_3_CTG2
CONTAINED
f14A50178000L13
AC226497.2
finished
21 RP11-216P6
HSCHR17_3_CTG2
CONTAINER
bA216P6
AC015884.15
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 50725 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC006070.1 1 50725 +
50726 88070 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC213246.1 1 37345 -
88071 138070 3 N 50000 contig no
138071 218314 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC129507.10 1 80244 +
218315 246966 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC240137.3 1 28652 +
246967 301881 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC129507.10 106842 161756 +
301882 351881 7 N 50000 contig no
351882 459098 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC003070.2 1 107217 -
459099 598854 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC244207.2 85636 225391 +
598855 838224 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243807.3 1 239370 -
838225 1042177 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243621.2 39177 243129 +
1042178 1250498 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243658.3 15200 223520 +
1250499 1397802 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243899.3 1 147304 -
1397803 1460739 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243627.3 167929 230865 +
1460740 1588274 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243659.3 90045 217579 +
1588275 1728900 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC243685.2 59895 200520 +
1728901 1777070 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 17 AC015855.13 48794 96963 +
1777071 1827070 18 N 50000 contig no
1827071 1949145 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC243829.3 1 122075 +
1949146 2142791 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC131056.5 1 193646 -
2142792 2166008 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC243829.3 214076 237292 +
2166009 2216008 22 N 50000 contig no
2216009 2302558 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC015884.15 1 86550 +
2302559 2336977 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC226497.2 1 34419 -
2336978 2424439 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC015884.15 120200 207661 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-206C20
HSCHR17_6_CTG4
bA206C20
-
-
AC006070.1
finished
161987 RPCI-11.1 3' / 3'
50725 / 37345
62547 / -
37331
30.83
Identified
2014-09-17
fetch_ncbi...
humpub
Certificate approved
2 ABC8_000005705249_N4
HSCHR17_6_CTG4
ABC8_000005705249_N4
-
-
AC213246.1
finished
37345 -        
  GAP (type-3) length unknown                  
4 RP11-1260E13
HSCHR17_2_CTG1
CONTAINER
bA1260E13
-
-
AC129507.10
finished
161756 RPCI-11.5 3' / 5'
80244 / 1
54915 / -
28652
14.7
Identified
2014-09-17
fetch_ncbi...
humpub
Certificate submitted, not yet approved
5 DD0002TNONU_P17
HSCHR17_2_CTG1
CONTAINED
DD0002TNONU_P17
-
-
AC240137.3
finished
28652 - 3' / 5'
28652 / 106842
- / 80244
28652
14.7
Identified
2014-09-17
fetch_ncbi...
humpub
Certificate submitted, not yet approved
4 RP11-1260E13
HSCHR17_2_CTG1
CONTAINER
bA1260E13
-
-
AC129507.10
finished
161756 RPCI-11.5        
  GAP (type-3) length unknown                  
7 CTB-39G8
HSCHR17_2_CTG5
bK39G8
-
-
AC003070.2
finished
107217 CIT978SK-B 5' / 5'
1 / 85636
- / -
85578
0.32
Identified
2014-09-17
fetch_ncbi...
humpub
Certificate submitted, not yet approved
8 CH17-41F14
HSCHR17_2_CTG5
bMO41F14
-
-
AC244207.2
finished
225391 CHORI-17 3' / 3'
225391 / 239370
- / -
5496
0.06
Identified
2014-09-17
fetch_ncbi...
humpub
 
9 CH17-33G3
HSCHR17_2_CTG5
bMO33G3
-
-
AC243807.3
finished
244867 CHORI-17 5' / 5'
1 / 39177
- / -
39176
0
Identified
2014-09-17
fetch_ncbi...
humpub
 
10 CH17-169A24
HSCHR17_2_CTG5
bMO169A24
-
-
AC243621.2
finished
243129 CHORI-17 3' / 5'
243129 / 15200
- / -
15199
0
Identified
2014-09-17
fetch_ncbi...
humpub
 
11 CH17-170H8
HSCHR17_2_CTG5
bMO170H8
-
-
AC243658.3
finished
223520 CHORI-17 3' / 3'
223520 / 147304
- / -
55587
0
Identified
2014-09-17
fetch_ncbi...
humpub
 
12 CH17-124M20
HSCHR17_2_CTG5
bMO124M20
-
-
AC243899.3
finished
202892 CHORI-17 5' / 5'
1 / 167929
- / -
167926
0
Identified
2014-09-17
fetch_ncbi...
humpub
 
13 CH17-157L1
HSCHR17_2_CTG5
bMO157L1
-
-
AC243627.3
finished
230865 CHORI-17 3' / 5'
230865 / 90045
- / -
90044
0
Identified
2014-09-17
fetch_ncbi...
humpub
 
14 CH17-202L17
HSCHR17_2_CTG5
bMO202L17
-
-
AC243659.3
finished
217579 CHORI-17 3' / 5'
217579 / 59895
- / -
59894
0
Identified
2014-09-17
fetch_ncbi...
humpub
 
15 CH17-227A2
HSCHR17_2_CTG5
bMO227A2
-
-
AC243685.2
finished
200520 CHORI-17 3' / 5'
200520 / 48794
- / -
48761
0.5
Identified
2014-09-17
fetch_ncbi...
humpub
Certificate submitted, not yet approved
16 CTC-480C19
HSCHR17_2_CTG5
bK480C19
-
-
AC015855.13
finished
96963 CIT-HSP-C        
  GAP (type-3) length unknown                  
18 CH17-8C20
HSCHR17_10_CTG4
CONTAINER
bMO8C20
-
-
AC243829.3
finished
237292 CHORI-17 3' / 3'
122075 / 193646
23217 / -
193646
100.2
Identified
2014-09-17
fetch_ncbi...
humpub
Certificate submitted, not yet approved
19 RP11-893G17
HSCHR17_10_CTG4
CONTAINED
bA893G17
-
-
AC131056.5
finished
193646 RPCI-11.4 5' / 5'
1 / 214076
- / 122075
193646
100.2
Identified
2014-09-17
fetch_ncbi...
humpub
Certificate submitted, not yet approved
18 CH17-8C20
HSCHR17_10_CTG4
CONTAINER
bMO8C20
-
-
AC243829.3
finished
237292 CHORI-17        
  GAP (type-3) length unknown                  
21 RP11-216P6
HSCHR17_3_CTG2
CONTAINER
bA216P6
-
-
AC015884.15
finished
207661 RPCI-11.1 3' / 3'
86550 / 34419
87462 / -
34419
8.96
Identified
2014-09-17
fetch_ncbi...
humpub
Certificate submitted, not yet approved
22 ABC14-50178000L13
HSCHR17_3_CTG2
CONTAINED
f14A50178000L13
-
-
AC226497.2
finished
34419 ABC14 5' / 5'
1 / 120200
- / 86550
34419
8.96
Identified
2014-09-17
fetch_ncbi...
humpub
Certificate submitted, not yet approved
21 RP11-216P6
HSCHR17_3_CTG2
CONTAINER
bA216P6
-
-
AC015884.15
finished
207661 RPCI-11.1        

Statistics

Clone Summary

Number of gaps
4
Gap types
type-3
4
Total clones
18
Clone HTGS Phases
finished
18
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
755,559
Total finished length of fin clones w/ overlap
3,055,701
Total finished length of fin clones w/o overlap
2,300,142
Total overlap length of fin+unfin clones
755,559
Total finished length of fin+unfin clones w/ overlap
3,055,701
Total finished length of fin+unfin clones w/o overlap
2,300,142

Dovetails

# rank accession status length date
1 1 AC006070.1 unfinished 62,547 Wed, 17 Sep 2014 23:27
2 4 AC129507.10 unfinished 54,915 Wed, 17 Sep 2014 23:27
3 18 AC243829.3 unfinished 23,217 Wed, 17 Sep 2014 23:27
4 21 AC015884.15 unfinished 87,462 Wed, 17 Sep 2014 23:27

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/zsy2hk2h