ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__SPRET_Ei__Y (TPF updated: 2014-10-21)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH35-73N5
SPRET/Ei_MmchrY_ctg1
f35A73N5
AC184103.1
finished
  GAP (type-3) length unknown    
3 CH35-62A13
SPRET/Ei_MmchrY_ctg2
f35A62A13
AC184105.1
finished
  GAP (type-3) length unknown    
5 CH35-74O5
SPRET/Ei_MmchrY_ctg3
f35A74O5
AC233166.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 179651 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC184103.1 1 179651 +
179652 229651 2 N 50000 contig no
229652 397950 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AC184105.1 1 168299 +
397951 447950 4 N 50000 contig no
447951 649790 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AC233166.2 1 201840 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH35-73N5
SPRET/Ei_MmchrY_ctg1
f35A73N5
-
-
AC184103.1
finished
179651 CH35        
  GAP (type-3) length unknown                  
3 CH35-62A13
SPRET/Ei_MmchrY_ctg2
f35A62A13
-
-
AC184105.1
finished
168299 CH35        
  GAP (type-3) length unknown                  
5 CH35-74O5
SPRET/Ei_MmchrY_ctg3
f35A74O5
-
-
AC233166.2
finished
201840 CH35        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
549,790
Total finished length of fin clones w/o overlap
549,790
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
549,790
Total finished length of fin+unfin clones w/o overlap
549,790

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Other links

* quick link - http://q.sanger.ac.uk/4m9c5yyh