ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__UNPL__1 (TPF updated: 2014-07-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP24-354E17
Mmchr1_random_ctg1
bN354E17
AC125149.4
finished
  GAP (type-3) length unknown    
3 RP23-226J10
Mmchr1_random_ctg2
bM226J10
AC133103.5
finished
  GAP (type-3) length unknown    
5 RP23-285N8
Mmchr1_random_ctg3
bM285N8
AC168977.6
finished
  GAP (type-3) length unknown    
7 WI1-1093I15
Mmchr1_random_ctg4
fM1093I15
AC175741.5
finished
  GAP (type-3) length unknown    
9 RP23-160D6
Mmchr1_random_ctg5
bM160D6
AC132444.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 169725 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC125149.4 1 169725 +
169726 219725 2 N 50000 contig no
219726 461460 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AC133103.5 1 241735 +
461461 511460 4 N 50000 contig no
511461 665078 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AC168977.6 1 153618 +
665079 715078 6 N 50000 contig no
715079 754418 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC175741.5 1 39340 +
754419 804418 8 N 50000 contig no
804419 1011379 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC132444.3 1 206961 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP24-354E17
Mmchr1_random_ctg1
bN354E17
-
-
AC125149.4
finished
169725 RPCI-24        
  GAP (type-3) length unknown                  
3 RP23-226J10
Mmchr1_random_ctg2
bM226J10
-
-
AC133103.5
finished
241735 RPCI-23        
  GAP (type-3) length unknown                  
5 RP23-285N8
Mmchr1_random_ctg3
bM285N8
-
-
AC168977.6
finished
153618 RPCI-23        
  GAP (type-3) length unknown                  
7 WI1-1093I15
Mmchr1_random_ctg4
fM1093I15
-
-
AC175741.5
finished
39340 Whitehead mouse fosmid        
  GAP (type-3) length unknown                  
9 RP23-160D6
Mmchr1_random_ctg5
bM160D6
-
-
AC132444.3
finished
206961 RPCI-23        

Statistics

Clone Summary

Number of gaps
4
Gap types
type-3
4
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
811,379
Total finished length of fin clones w/o overlap
811,379
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
811,379
Total finished length of fin+unfin clones w/o overlap
811,379

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Other links

* quick link - http://q.sanger.ac.uk/3fkluvsx