ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__UNPL__5 (TPF updated: 2014-10-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP23-15P15
MMchr5_random_ctg1
bM15P15
AC164084.5
finished
  GAP (type-3) length unknown    
3 RP23-115J11
MMchr5_random_ctg2
bM115J11
AC165294.4
finished
  GAP (type-3) length unknown    
5 RP23-319L16
MMchr5_random_ctg3
bM319L16
AC125178.3
finished
  GAP (type-3) length unknown    
7 RP23-403K16
MMchr5_random_ctg4
bM403K16
AC140325.3
finished
  GAP (type-3) length unknown    
9 RP23-261G21
MMchr5_random_ctg5
bM261G21
AC123873.4
finished
10 RP24-248P10
MMchr5_random_ctg5
bN248P10
AC126241.4
finished
11 RP24-122B7
MMchr5_random_ctg5
bN122B7
AC126035.4
finished
12 RP23-86K21
MMchr5_random_ctg5
bM86K21
AC163611.4
finished
13 RP24-221M24
MMchr5_random_ctg5
bN221M24
AC140365.4
finished
14 RP23-82D2
MMchr5_random_ctg5
bM82D2
AC124606.3
finished
15 RP23-270E19
MMchr5_random_ctg5
bM270E19
AC133095.3
finished
16 RP24-288A1
MMchr5_random_ctg5
bN288A1
AC147261.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 199368 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC164084.5 1 199368 +
199369 249368 2 N 50000 contig no
249369 455144 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AC165294.4 1 205776 +
455145 505144 4 N 50000 contig no
505145 689333 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AC125178.3 1 184189 +
689334 739333 6 N 50000 contig no
739334 935326 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC140325.3 1 195993 +
935327 985326 8 N 50000 contig no
985327 1180731 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 16 AC123873.4 1 195405 +
1180732 1296911 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 16 AC126241.4 71462 187641 +
1296912 1463791 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 16 AC126035.4 44422 211301 +
1463792 1603189 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 16 AC163611.4 1 139398 -
1603190 1704211 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 16 AC140365.4 1 101022 -
1704212 1859984 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 16 AC124606.3 1 155773 -
1859985 1917269 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 16 AC133095.3 1 57285 -
1917270 1938338 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 16 AC147261.5 1 21069 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP23-15P15
MMchr5_random_ctg1
bM15P15
-
-
AC164084.5
finished
199368 RPCI-23        
  GAP (type-3) length unknown                  
3 RP23-115J11
MMchr5_random_ctg2
bM115J11
-
-
AC165294.4
finished
205776 RPCI-23        
  GAP (type-3) length unknown                  
5 RP23-319L16
MMchr5_random_ctg3
bM319L16
-
-
AC125178.3
finished
184189 RPCI-23        
  GAP (type-3) length unknown                  
7 RP23-403K16
MMchr5_random_ctg4
bM403K16
-
-
AC140325.3
finished
195993 RPCI-23        
  GAP (type-3) length unknown                  
9 RP23-261G21
MMchr5_random_ctg5
bM261G21
-
-
AC123873.4
finished
195405 RPCI-23 3' / 5'
195405 / 71462
- / -
71461
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
10 RP24-248P10
MMchr5_random_ctg5
bN248P10
-
-
AC126241.4
finished
187641 RPCI-24 3' / 5'
187641 / 44422
- / -
44420
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
11 RP24-122B7
MMchr5_random_ctg5
bN122B7
-
-
AC126035.4
finished
211301 RPCI-24 3' / 3'
211301 / 139398
- / -
76383
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
12 RP23-86K21
MMchr5_random_ctg5
bM86K21
-
-
AC163611.4
finished
215781 RPCI-23 5' / 3'
1 / 101022
- / -
90451
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
13 RP24-221M24
MMchr5_random_ctg5
bN221M24
-
-
AC140365.4
finished
191473 RPCI-24 5' / 3'
1 / 155773
- / -
69945
0.01
Identified
2014-10-23
fetch_ncbi...
humpub
 
14 RP23-82D2
MMchr5_random_ctg5
bM82D2
-
-
AC124606.3
finished
225720 RPCI-23 5' / 3'
1 / 57285
- / -
90115
0.06
Identified
2014-10-23
fetch_ncbi...
humpub
 
15 RP23-270E19
MMchr5_random_ctg5
bM270E19
-
-
AC133095.3
finished
147415 RPCI-23 5' / 3'
1 / 21069
- / -
138851
0.03
Identified
2014-10-23
fetch_ncbi...
humpub
 
16 RP24-288A1
MMchr5_random_ctg5
bN288A1
-
-
AC147261.5
finished
159935 RPCI-24        

Statistics

Clone Summary

Number of gaps
4
Gap types
type-3
4
Total clones
12
Clone HTGS Phases
finished
12
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
581,626
Total finished length of fin clones w/ overlap
2,319,997
Total finished length of fin clones w/o overlap
1,738,371
Total overlap length of fin+unfin clones
581,626
Total finished length of fin+unfin clones w/ overlap
2,319,997
Total finished length of fin+unfin clones w/o overlap
1,738,371

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/neeysyqc