ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__UNPL__Y (TPF updated: 2014-04-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP24-189A15
MmchrY_ctgU1
bN189A15
AC145432.2
finished
2 RP24-165C16
MmchrY_ctgU1
bN165C16
AC144553.2
finished
  GAP (type-3) length unknown    
4 RP24-561J22
MmchrY_ctgU2
bN561J22
AC147126.2
finished
5 RP24-306E24
MmchrY_ctgU2
bN306E24
AC183375.2
finished
  GAP (type-3) length unknown    
7 CH36-527P8
MmchrY_ctgU3
bML527P8
AC225568.3
finished
  GAP (type-3) length unknown    
9 RP24-136E4
MmchrY_ctgU4
bN136E4
AC234645.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 171334 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC145432.2 1 171334 -
171335 182347 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC144553.2 127629 138641 +
182348 232347 3 N 50000 contig no
232348 373396 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC147126.2 1 141049 +
373397 492222 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC183375.2 3314 122139 +
492223 542222 6 N 50000 contig no
542223 698060 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC225568.3 1 155838 +
698061 748060 8 N 50000 contig no
748061 906159 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC234645.3 1 158099 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP24-189A15
MmchrY_ctgU1
bN189A15
-
-
AC145432.2
finished
171334 RPCI-24 5' / 5'
1 / 127629
- / -
127627
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
2 RP24-165C16
MmchrY_ctgU1
bN165C16
-
-
AC144553.2
finished
138641 RPCI-24        
  GAP (type-3) length unknown                  
4 RP24-561J22
MmchrY_ctgU2
bN561J22
-
-
AC147126.2
finished
141049 RPCI-24 3' / 5'
141049 / 3314
- / -
3313
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 RP24-306E24
MmchrY_ctgU2
bN306E24
-
-
AC183375.2
finished
122139 RPCI-24        
  GAP (type-3) length unknown                  
7 CH36-527P8
MmchrY_ctgU3
bML527P8
-
-
AC225568.3
finished
155838 CHORI-36        
  GAP (type-3) length unknown                  
9 RP24-136E4
MmchrY_ctgU4
bN136E4
-
-
AC234645.3
finished
158099 RPCI-24        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
130,940
Total finished length of fin clones w/ overlap
887,100
Total finished length of fin clones w/o overlap
756,160
Total overlap length of fin+unfin clones
130,940
Total finished length of fin+unfin clones w/ overlap
887,100
Total finished length of fin+unfin clones w/o overlap
756,160

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Other links

* quick link - http://q.sanger.ac.uk/1h9ikgve