ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__NOD_ShiLtJ__17 (TPF updated: 2014-04-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH29-16G7
Mmchr17_CHO_IDD1
bCN16G7
EPN details
CU405655.14
finished
2 CH29-136I23
Mmchr17_CHO_IDD1
bCN136I23
EPN details
CU406960.9
finished
3 CH29-502I11
Mmchr17_CHO_IDD1
bCN502I11
EPN details
CU407132.14
finished
4 CH29-525B18
Mmchr17_CHO_IDD1
bCN525B18
EPN details
CU424424.15
finished
5 CH29-594M24
Mmchr17_CHO_IDD1
bCN594M24
EPN details
CU407311.8
finished
6 CH29-490B7
Mmchr17_CHO_IDD1
bCN490B7
EPN details
CU407310.14
finished
7 CH29-21F6
Mmchr17_CHO_IDD1
bCN21F6
EPN details
CU406965.9
finished
8 CH29-26K20
Mmchr17_CHO_IDD1
bCN26K20
EPN details
CU406966.9
finished
9 CH29-167B15
Mmchr17_CHO_IDD1
bCN167B15
EPN details
CU406961.7
finished
10 CH29-488C17
Mmchr17_CHO_IDD1
bCN488C17
EPN details
CU407309.9
finished
11 CH29-159H6
Mmchr17_CHO_IDD1
bCN159H6
EPN details
CU442726.8
finished
  GAP (type-2) length unknown    
13 CH29-548L14
Mmchr17_CHO_IDD1
bCN548L14
EPN details
CU467500.8
finished
14 CH29-73A3
Mmchr17_CHO_IDD1
bCN73A3
EPN details
CU367883.10
finished
15 CH29-160I20
Mmchr17_CHO_IDD1
bCN160I20
EPN details
CU457375.18
finished
16 CH29-511L9
Mmchr17_CHO_IDD1
bCN511L9
EPN details
CU406999.8
finished
17 CH29-33F16
Mmchr17_CHO_IDD1
bCN33F16
EPN details
CU406998.9
finished
  GAP (type-2) length unknown    
19 CH29-542E11
Mmchr17_CHO_IDD1
bCN542E11
EPN details
CU463040.8
finished
20 CH29-99H23
Mmchr17_CHO_IDD1
bCN99H23
EPN details
CU407123.9
finished
21 CH29-68L23
Mmchr17_CHO_IDD1
bCN68L23
EPN details
CU369188.7
finished
22 CH29-495C20
Mmchr17_CHO_IDD1
bCN495C20
EPN details
CU463184.5
finished
23 CH29-161B12
Mmchr17_CHO_IDD1
bCN161B12
EPN details
CU459195.4
finished
24 CH29-38K16
Mmchr17_CHO_IDD1
bCN38K16
EPN details
CU459049.7
finished
25 CH29-547C13
Mmchr17_CHO_IDD1
bCN547C13
EPN details
CU463185.6
finished
26 CH29-540E17
Mmchr17_CHO_IDD1
bCN540E17
EPN details
CU462908.7
finished
27 CH29-16N15
Mmchr17_CHO_IDD1
bCN16N15
EPN details
CU459042.15
finished
28 CH29-502G10
Mmchr17_CHO_IDD1
bCN502G10
EPN details
CU462863.24
finished
29 CH29-100E15
Mmchr17_CHO_IDD1
bCN100E15
EPN details
CU462875.11
finished
30 CH29-28D15
Mmchr17_CHO_IDD1
bCN28D15
EPN details
CU462907.10
finished
31 CH29-489B21
Mmchr17_CHO_IDD1
bCN489B21
EPN details
CU462864.4
finished
32 CH29-161F5
Mmchr17_CHORI29_IDD16_1
bCN161F5
EPN details
CT010485.17
finished
33 CH29-70E9
Mmchr17_CHORI29_IDD16_1
bCN70E9
EPN details
CT027568.16
finished
34 CH29-15F19
Mmchr17_CHORI29_IDD16_1
bCN15F19
EPN details
CT573099.7
finished
35 CH29-485N6
Mmchr17_CHORI29_IDD16_1
bCN485N6
EPN details
CT009677.9
finished
36 CH29-604F11
Mmchr17_CHORI29_IDD16_1
bCN604F11
EPN details
CT009659.6
finished
37 CH29-505N5
Mmchr17_CHORI29_IDD16_1
bCN505N5
EPN details
CT009658.7
finished
38 CH29-521N19
Mmchr17_CHORI29_IDD16_1
bCN521N19
EPN details
CT010441.11
finished
39 CH29-545C14
Mmchr17_CHORI29_IDD16_1
bCN545C14
EPN details
CT573362.4
finished
40 CH29-539C17
Mmchr17_CHORI29_IDD16_1
bCN539C17
EPN details
CU074402.8
finished
41 CH29-621D18
Mmchr17_CHORI29_IDD16_1
bCN621D18
EPN details
CT009661.10
finished
42 CH29-133M20
Mmchr17_CHORI29_IDD16_1
bCN133M20
EPN details
CT009579.20
finished
43 CH29-511O15
Mmchr17_CHORI29_IDD16_1
bCN511O15
EPN details
CT009662.23
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 216161 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU405655.14 1 216161 +
216162 398534 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU406960.9 1843 184215 +
398535 502816 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU407132.14 2001 106282 +
502817 648365 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU424424.15 2001 147549 +
648366 829325 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU407311.8 2001 182960 +
829326 983647 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU407310.14 2001 156322 +
983648 1211677 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU406965.9 1584 229613 +
1211678 1282044 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU406966.9 2001 72367 +
1282045 1517566 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU406961.7 2001 237522 +
1517567 1657695 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU407309.9 2001 142129 +
1657696 1804105 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU442726.8 2001 148410 +
1804106 1854105 12 N 50000 contig yes
1854106 1945370 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU467500.8 1 91265 +
1945371 2186612 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU367883.10 2001 243242 +
2186613 2320759 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU457375.18 2001 136147 +
2320760 2525132 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU406999.8 2001 206373 +
2525133 2655590 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU406998.9 2001 132458 +
2655591 2705590 18 N 50000 contig yes
2705591 2857545 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU463040.8 1 151955 +
2857546 3083309 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU407123.9 2001 227764 +
3083310 3336240 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU369188.7 2001 254931 +
3336241 3458925 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU463184.5 2001 124685 +
3458926 3473035 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU459195.4 9733 23842 +
3473036 3713017 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU459049.7 2001 241982 +
3713018 3846035 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU463185.6 2001 135018 +
3846036 4018761 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU462908.7 38387 211112 +
4018762 4132140 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU459042.15 102939 216317 +
4132141 4293119 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU462863.24 2001 162979 +
4293120 4516664 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU462875.11 2001 225545 +
4516665 4698892 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU462907.10 2001 184228 +
4698893 4910976 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU462864.4 2001 214084 +
4910977 5169628 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT010485.17 1 258652 +
5169629 5258350 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT027568.16 2001 90722 +
5258351 5338823 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT573099.7 2001 82473 +
5338824 5519941 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT009677.9 1 181118 -
5519942 5646107 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT009659.6 21104 147269 +
5646108 5834260 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT009658.7 1 188153 -
5834261 6067902 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT010441.11 1 233642 -
6067903 6124151 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT573362.4 1 56249 -
6124152 6150035 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CU074402.8 2001 27884 +
6150036 6373017 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT009661.10 2001 224982 +
6373018 6590699 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT009579.20 2001 219682 +
6590700 6819896 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 43 CT009662.23 2001 231197 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH29-16G7
Mmchr17_CHO_IDD1
bCN16G7
EPN details
Analysed
25-JUN-07
CU405655.14
finished
216161 CHORI-29 3' / 5'
216161 / 1843
- / -
1842
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
2 CH29-136I23
Mmchr17_CHO_IDD1
bCN136I23
EPN details
Analysed
14-JUN-07
CU406960.9
finished
184215 CHORI-29 3' / 5'
184215 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
3 CH29-502I11
Mmchr17_CHO_IDD1
bCN502I11
EPN details
Analysed
25-JUN-07
CU407132.14
finished
106282 CHORI-29 3' / 5'
106282 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
4 CH29-525B18
Mmchr17_CHO_IDD1
bCN525B18
EPN details
Analysed
01-FEB-08
CU424424.15
finished
147549 CHORI-29 3' / 5'
147549 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 CH29-594M24
Mmchr17_CHO_IDD1
bCN594M24
EPN details
Analysed
25-JUN-07
CU407311.8
finished
182960 CHORI-29 3' / 5'
182960 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
6 CH29-490B7
Mmchr17_CHO_IDD1
bCN490B7
EPN details
Analysed
26-SEP-07
CU407310.14
finished
156322 CHORI-29 3' / 5'
156322 / 1584
- / -
1583
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
7 CH29-21F6
Mmchr17_CHO_IDD1
bCN21F6
EPN details
Analysed
04-MAY-07
CU406965.9
finished
229613 CHORI-29 3' / 5'
229613 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
8 CH29-26K20
Mmchr17_CHO_IDD1
bCN26K20
EPN details
Analysed
14-JUN-07
CU406966.9
finished
72367 CHORI-29 3' / 5'
72367 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
9 CH29-167B15
Mmchr17_CHO_IDD1
bCN167B15
EPN details
Analysed
05-MAY-07
CU406961.7
finished
237522 CHORI-29 3' / 5'
237522 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
10 CH29-488C17
Mmchr17_CHO_IDD1
bCN488C17
EPN details
Analysed
14-JUN-07
CU407309.9
finished
142129 CHORI-29 3' / 5'
142129 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
11 CH29-159H6
Mmchr17_CHO_IDD1
bCN159H6
EPN details
Analysed
14-JUN-07
CU442726.8
finished
148410 CHORI-29        
  GAP (type-2) length unknown                  
13 CH29-548L14
Mmchr17_CHO_IDD1
bCN548L14
EPN details
Analysed
09-NOV-07
CU467500.8
finished
91265 CHORI-29 3' / 5'
91265 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
14 CH29-73A3
Mmchr17_CHO_IDD1
bCN73A3
EPN details
Analysed
11-SEP-07
CU367883.10
finished
243242 CHORI-29 3' / 5'
243242 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
15 CH29-160I20
Mmchr17_CHO_IDD1
bCN160I20
EPN details
Analysed
28-FEB-08
CU457375.18
finished
136147 CHORI-29 3' / 5'
136147 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
16 CH29-511L9
Mmchr17_CHO_IDD1
bCN511L9
EPN details
Analysed
05-MAY-07
CU406999.8
finished
206373 CHORI-29 3' / 5'
206373 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
17 CH29-33F16
Mmchr17_CHO_IDD1
bCN33F16
EPN details
Analysed
14-JUN-07
CU406998.9
finished
132458 CHORI-29        
  GAP (type-2) length unknown                  
19 CH29-542E11
Mmchr17_CHO_IDD1
bCN542E11
EPN details
Analysed
18-SEP-07
CU463040.8
finished
151955 CHORI-29 3' / 5'
151955 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
20 CH29-99H23
Mmchr17_CHO_IDD1
bCN99H23
EPN details
Analysed
10-MAY-07
CU407123.9
finished
227764 CHORI-29 3' / 5'
227764 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
21 CH29-68L23
Mmchr17_CHO_IDD1
bCN68L23
EPN details
Analysed
20-APR-07
CU369188.7
finished
254931 CHORI-29 3' / 5'
254931 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
22 CH29-495C20
Mmchr17_CHO_IDD1
bCN495C20
EPN details
Analysed
24-AUG-07
CU463184.5
finished
124685 CHORI-29 3' / 5'
124685 / 9733
- / -
9732
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
23 CH29-161B12
Mmchr17_CHO_IDD1
bCN161B12
EPN details
Analysed
14-JUN-07
CU459195.4
finished
23842 CHORI-29 3' / 5'
23842 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
24 CH29-38K16
Mmchr17_CHO_IDD1
bCN38K16
EPN details
Analysed
19-SEP-07
CU459049.7
finished
241982 CHORI-29 3' / 5'
241982 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
25 CH29-547C13
Mmchr17_CHO_IDD1
bCN547C13
EPN details
Analysed
05-OCT-07
CU463185.6
finished
135018 CHORI-29 3' / 5'
135018 / 38387
- / -
38386
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
26 CH29-540E17
Mmchr17_CHO_IDD1
bCN540E17
EPN details
Analysed
18-AUG-07
CU462908.7
finished
211112 CHORI-29 3' / 5'
211112 / 102939
- / -
102937
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
27 CH29-16N15
Mmchr17_CHO_IDD1
bCN16N15
EPN details
Analysed
03-OCT-07
CU459042.15
finished
216317 CHORI-29 3' / 5'
216317 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
28 CH29-502G10
Mmchr17_CHO_IDD1
bCN502G10
EPN details
Analysed
12-JUL-08
CU462863.24
finished
162979 CHORI-29 3' / 5'
162979 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
29 CH29-100E15
Mmchr17_CHO_IDD1
bCN100E15
EPN details
Analysed
04-SEP-07
CU462875.11
finished
225545 CHORI-29 3' / 5'
225545 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
30 CH29-28D15
Mmchr17_CHO_IDD1
bCN28D15
EPN details
Analysed
03-OCT-07
CU462907.10
finished
184228 CHORI-29 3' / 5'
184228 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
31 CH29-489B21
Mmchr17_CHO_IDD1
bCN489B21
EPN details
Analysed
25-JUN-07
CU462864.4
finished
214084 CHORI-29 3' / 5'
214084 / 1
- / -
0
0
Identified
2011-07-28
agp2oracle
jt8
 
32 CH29-161F5
Mmchr17_CHORI29_IDD16_1
bCN161F5
EPN details
Submitted to EMBL
13-JAN-09
CT010485.17
finished
258652 CHORI-29 3' / 5'
258652 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
33 CH29-70E9
Mmchr17_CHORI29_IDD16_1
bCN70E9
EPN details
Submitted to EMBL
13-JAN-09
CT027568.16
finished
90722 CHORI-29 3' / 5'
90722 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
34 CH29-15F19
Mmchr17_CHORI29_IDD16_1
bCN15F19
EPN details
Submitted to EMBL
13-JAN-09
CT573099.7
finished
82473 CHORI-29 3' / 3'
82473 / 181118
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
35 CH29-485N6
Mmchr17_CHORI29_IDD16_1
bCN485N6
EPN details
Submitted to EMBL
13-JAN-09
CT009677.9
finished
183118 CHORI-29 5' / 5'
1 / 21104
- / -
21103
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
36 CH29-604F11
Mmchr17_CHORI29_IDD16_1
bCN604F11
EPN details
Analysed
25-AUG-05
CT009659.6
finished
147269 CHORI-29 3' / 3'
147269 / 188153
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
37 CH29-505N5
Mmchr17_CHORI29_IDD16_1
bCN505N5
EPN details
Submitted to EMBL
13-JAN-09
CT009658.7
finished
190153 CHORI-29 5' / 3'
1 / 233642
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
38 CH29-521N19
Mmchr17_CHORI29_IDD16_1
bCN521N19
EPN details
Submitted to EMBL
13-JAN-09
CT010441.11
finished
235642 CHORI-29 5' / 3'
1 / 56249
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
39 CH29-545C14
Mmchr17_CHORI29_IDD16_1
bCN545C14
EPN details
Submitted to EMBL
13-JAN-09
CT573362.4
finished
58249 CHORI-29 5' / 5'
1 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
40 CH29-539C17
Mmchr17_CHORI29_IDD16_1
bCN539C17
EPN details
Submitted to EMBL
13-JAN-09
CU074402.8
finished
27884 CHORI-29 3' / 5'
27884 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
41 CH29-621D18
Mmchr17_CHORI29_IDD16_1
bCN621D18
EPN details
Submitted to EMBL
13-JAN-09
CT009661.10
finished
224982 CHORI-29 3' / 5'
224982 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
42 CH29-133M20
Mmchr17_CHORI29_IDD16_1
bCN133M20
EPN details
Submitted to EMBL
13-JAN-09
CT009579.20
finished
219682 CHORI-29 3' / 5'
219682 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
43 CH29-511O15
Mmchr17_CHORI29_IDD16_1
bCN511O15
EPN details
Submitted to EMBL
13-JAN-09
CT009662.23
finished
231197 CHORI-29        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
41
Clone HTGS Phases
finished
41
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
237,583
Total finished length of fin clones w/ overlap
6,957,480
Total finished length of fin clones w/o overlap
6,719,897
Total overlap length of fin+unfin clones
237,583
Total finished length of fin+unfin clones w/ overlap
6,957,480
Total finished length of fin+unfin clones w/o overlap
6,719,897

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* quick link - http://q.sanger.ac.uk/dzyerml8