ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__NOD_ShiLtJ__6 (TPF updated: 2015-07-05)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 CH29-169E6
Mmchr6_CHORI29_IDD6_1+2
bCN169E6
CU207393.16
finished
2 CH29-505C15
Mmchr6_CHORI29_IDD6_1+2
bCN505C15
CU207379.7
finished
3 CH29-172J19
Mmchr6_CHORI29_IDD6_1+2
bCN172J19
CU210861.18
finished
4 CH29-567F20
Mmchr6_CHORI29_IDD6_1+2
bCN567F20
CU210928.16
finished
  GAP (type-2) length unknown    
6 CH29-2E15
Mmchr6_CHORI29_IDD6_1+2
bCN2E15
CU210899.12
finished
7 CH29-149F14
Mmchr6_CHORI29_IDD6_1+2
bCN149F14
CU207392.14
finished
8 CH29-34O20
Mmchr6_CHORI29_IDD6_1+2
bCN34O20
CU326367.19
finished
9 CH29-170N4
Mmchr6_CHORI29_IDD6_1+2
bCN170N4
CU207315.17
finished
10 CH29-494L21
Mmchr6_CHORI29_IDD6_1+2
bCN494L21
CU207316.8
finished
11 CH29-33G21
Mmchr6_CHORI29_IDD6_1+2
bCN33G21
CU458742.8
finished
12 CH29-136F14
Mmchr6_CHORI29_IDD6_1+2
bCN136F14
CU207391.12
finished
13 CH29-191M20
Mmchr6_CHORI29_IDD6_1+2
bCN191M20
CU207395.25
finished
14 CH29-115K17
Mmchr6_CHORI29_IDD6_1+2
bCN115K17
CU302421.25
finished
  GAP (type-2) length unknown    
16 CH29-548J23
Mmchr6_CHORI29_IDD6_1+2
bCN548J23
CU302237.7
finished
  GAP (type-2) length unknown    
18 CH29-566K17
Mmchr6_CHORI29_IDD6_1+2
bCN566K17
CU207333.11
finished
19 CH29-502J5
Mmchr6_CHORI29_IDD6_1+2
bCN502J5
CU207317.13
finished
20 CH29-491I15
Mmchr6_CHORI29_IDD6_1+2
bCN491I15
CU207302.23
finished
21 CH29-521I9
Mmchr6_CHORI29_IDD6_1+2
bCN521I9
CU210876.20
finished
22 CH29-183C3
Mmchr6_CHORI29_IDD6_1+2
bCN183C3
CU207394.18
finished
23 CH29-600G13
Mmchr6_CHORI29_IDD6_1+2
bCN600G13
CU914167.1
finished
24 CH29-77N19
Mmchr6_CHORI29_IDD6_1+2
bCN77N19
CU207396.16
finished
25 CH29-565A10
Mmchr6_CHORI29_IDD6_1+2
bCN565A10
CU210848.9
finished
26 CH29-29G21
Mmchr6_CHORI29_IDD6_1+2
bCN29G21
CU210927.8
finished
  GAP (type-2) length unknown    
28 CH29-26N18
Mmchr6_CHORI29_IDD6_1+2
bCN26N18
CU210862.7
finished
29 CH29-76L1
Mmchr6_CHORI29_IDD6_1+2
bCN76L1
CU207335.14
finished
30 CH29-97M19
Mmchr6_CHORI29_IDD6_1+2
bCN97M19
CU467017.8
finished
31 CH29-526O16
Mmchr6_CHORI29_IDD6_1+2
bCN526O16
CU468014.15
finished
32 CH29-612L7
Mmchr6_CHORI29_IDD6_1+2
bCN612L7
CU207318.9
finished
33 CH29-30D6
Mmchr6_CHORI29_IDD6_1+2
bCN30D6
CU210900.9
finished
  GAP (type-2) length unknown    
35 CH29-493P23
Mmchr6_CHORI29_IDD6_1+2
bCN493P23
CU424479.8
finished
36 CH29-565O6
Mmchr6_CHORI29_IDD6_1+2
bCN565O6
CU302294.10
finished
  GAP (type-2) length unknown    
38 CH29-607J18
Mmchr6_CHORI29_IDD6_1+2
bCN607J18
CU207334.6
finished
39 CH29-68O18
Mmchr6_CHORI29_IDD6_1+2
bCN68O18
CU207319.10
finished
40 CH29-115D7
Mmchr6_CHORI29_IDD6_1+2
bCN115D7
CU210926.7
finished
41 CH29-522O3
Mmchr6_CHORI29_IDD6_1+2
bCN522O3
CU234138.4
finished
  GAP (type-3) length unknown    
43 CH29-38P9
Mmchr6_CHORI29_IDD6_AM
bCN38P9
CU210875.9
finished
44 CH29-493D4
Mmchr6_CHORI29_IDD6_AM
bCN493D4
CU207332.5
finished
45 CH29-4H7
Mmchr6_CHORI29_IDD6_AM
bCN4H7
CU469450.4
finished
46 CH29-575J15
Mmchr6_CHORI29_IDD6_AM
bCN575J15
CU463286.9
finished
47 CH29-540A18
Mmchr6_CHORI29_IDD6_AM
bCN540A18
CU570803.6
finished
48 CH29-171N14
Mmchr6_CHORI29_IDD6_AM
bCN171N14
CU424478.6
finished
  GAP (type-2) length unknown    
50 CH29-511G10
Mmchr6_CHORI29_IDD6_AM
bCN511G10
CU467659.6
finished
51 CH29-584N12
Mmchr6_CHORI29_IDD6_AM
bCN584N12
CU442703.8
finished
52 CH29-175G16
Mmchr6_CHORI29_IDD6_AM
bCN175G16
CU457745.7
finished
  GAP (type-2) length unknown    
54 CH29-166C20
Mmchr6_CHORI29_IDD6_AM
bCN166C20
CU407130.7
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 258336 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU207393.16 1 258336 +
258337 407812 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU207379.7 2001 151476 +
407813 593664 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU210861.18 2001 187852 +
593665 799053 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU210928.16 2001 207389 +
799054 849053 5 N 50000 contig yes
849054 1003185 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU210899.12 1 154132 +
1003186 1265571 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207392.14 1865 264250 +
1265572 1401044 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU326367.19 2001 137473 +
1401045 1522059 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207315.17 2001 123015 +
1522060 1751385 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207316.8 2001 231326 +
1751386 1788171 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU458742.8 2001 38786 +
1788172 2007603 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207391.12 2001 221432 +
2007604 2135617 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207395.25 2001 130014 +
2135618 2329557 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU302421.25 2001 195940 +
2329558 2379557 15 N 50000 contig yes
2379558 2533904 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CU302237.7 1 154347 +
2533905 2583904 17 N 50000 contig yes
2583905 2661508 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207333.11 1 77604 +
2661509 2806127 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207317.13 2001 146619 +
2806128 3055388 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207302.23 2013 251273 +
3055389 3169500 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU210876.20 2001 116112 +
3169501 3376949 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207394.18 2001 209449 +
3376950 3519065 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU914167.1 1 142116 -
3519066 3735501 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207396.16 15837 232272 +
3735502 3890909 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU210848.9 2001 157408 +
3890910 3909868 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU210927.8 2001 20959 +
3909869 3959868 27 N 50000 contig yes
3959869 4117284 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU210862.7 1 157416 +
4117285 4315077 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU207335.14 2001 199793 +
4315078 4377113 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU467017.8 2001 64036 +
4377114 4508674 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU468014.15 2001 133561 +
4508675 4726359 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU207318.9 2001 219685 +
4726360 4910792 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU210900.9 2001 186433 +
4910793 4960792 34 N 50000 contig yes
4960793 5155256 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 CU424479.8 1 194464 +
5155257 5343242 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 CU302294.10 1 187986 -
5343243 5393242 37 N 50000 contig yes
5393243 5580323 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 CU207334.6 1 187081 +
5580324 5779759 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 CU207319.10 2001 201436 +
5779760 5865343 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 CU210926.7 2001 87584 +
5865344 5956088 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 CU234138.4 2001 92745 +
5956089 6006088 42 N 50000 contig no
6006089 6175059 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 48 CU210875.9 1 168971 +
6175060 6400461 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 48 CU207332.5 2001 227402 +
6400462 6450552 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 48 CU469450.4 2001 52091 +
6450553 6625706 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 48 CU463286.9 2001 177154 +
6625707 6716075 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 48 CU570803.6 2001 92369 +
6716076 6891444 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 48 CU424478.6 2001 177369 +
6891445 6941444 49 N 50000 contig yes
6941445 7022968 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 52 CU467659.6 2001 83524 -
7022969 7184696 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 52 CU442703.8 1 161728 +
7184697 7336398 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 52 CU457745.7 16265 167966 +
7336399 7386398 53 N 50000 contig yes
7386399 7600858 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 CU407130.7 1 214460 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
9
Gap types
type-2
8
type-3
1
Total clones
45
Clone HTGS Phases
finished
45
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
97,964
Total finished length of fin clones w/ overlap
7,248,834
Total finished length of fin clones w/o overlap
7,150,870
Total overlap length of fin+unfin clones
97,964
Total finished length of fin+unfin clones w/ overlap
7,248,834
Total finished length of fin+unfin clones w/o overlap
7,150,870

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/4arjk150