ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__NOD_MrkTac__1 (TPF updated: 2015-03-27)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DN-396O20
Mmchr1_NOD_IDD5_1
bQ396O20
AL671997.10
finished
2 DN-378G17
Mmchr1_NOD_IDD5_1
bQ378G17
AL672024.9
finished
  GAP (type-2) length unknown    
4 DN-257N2
Mmchr1_NOD_IDD5_1
bQ257N2
AL596283.10
finished
5 DN-29B18
Mmchr1_NOD_IDD5_1
bQ29B18
AL645951.20
finished
  GAP (type-2) length unknown    
7 DN-276O13
Mmchr1_NOD_IDD5_1
bQ276O13
AL645946.6
finished
8 DN-353G8
Mmchr1_NOD_IDD5_1
bQ353G8
AL645986.6
finished
  GAP (type-2) length unknown    
10 DN-74E14
Mmchr1_NOD_IDD5_1
bQ74E14
AL683801.10
finished
11 DN-189H16
Mmchr1_NOD_IDD5_3
bQ189H16
CU407129.10
finished
12 DN-78O3
Mmchr1_NOD_IDD5_3
bQ78O3
CU392853.2
finished
13 DN-113H18
Mmchr1_NOD_IDD5_3
bQ113H18
CU406962.8
finished
14 DN-500J16
Mmchr1_NOD_IDD5_3
bQ500J16
CU424488.5
finished
15 DN-239K2
Mmchr1_NOD_IDD5_3
bQ239K2
CU368751.6
finished
16 DN-297H21
Mmchr1_NOD_IDD5_3
bQ297H21
CU442724.6
finished
17 DN-91B14
Mmchr1_NOD_IDD5_3
bQ91B14
CU424489.10
finished
18 DN-36B11
Mmchr1_NOD_IDD5_3
bQ36B11
CU392848.5
finished
19 DN-92I8
Mmchr1_NOD_IDD5_3
bQ92I8
CU442760.6
finished
20 DN-238I7
Mmchr1_NOD_IDD5_3
bQ238I7
CU329676.6
finished
21 DN-80C21
Mmchr1_NOD_IDD5_3
bQ80C21
CU302198.4
finished
22 DN-328G15
Mmchr1_NOD_IDD5_3
bQ328G15
CU407305.6
finished
23 DN-232J23
Mmchr1_NOD_IDD5_3
bQ232J23
CU457480.8
finished
24 DN-321F3
Mmchr1_NOD_IDD5_3
bQ321F3
CU459074.36
finished
25 DN-239C14
Mmchr1_NOD_IDD5_3
bQ239C14
CU372918.5
finished
26 DN-308F13
Mmchr1_NOD_IDD5_3
bQ308F13
CU369554.5
finished
27 DN-521A23
Mmchr1_NOD_IDD5_3
bQ521A23
CU372922.5
finished
28 DN-88L9
Mmchr1_NOD_IDD5_3
bQ88L9
CU372910.8
finished
29 DN-142L10
Mmchr1_NOD_IDD5_3
bQ142L10
CU372905.3
finished
30 DN-451I14
Mmchr1_NOD_IDD5_3
bQ451I14
CU468163.3
finished
31 DN-286K15
Mmchr1_NOD_IDD5_3
bQ286K15
CU392847.12
finished
32 DN-293C11
Mmchr1_NOD_IDD5_3
bQ293C11
CU468299.2
finished
  GAP (type-2) length unknown    
34 DN-517L23
Mmchr1_NOD_IDD5_3
bQ517L23
CU392849.6
finished
35 DN-488B7
Mmchr1_NOD_IDD5_3
bQ488B7
CU459008.2
finished
36 DN-427K8
Mmchr1_NOD_IDD5_3
bQ427K8
CU459207.8
finished
37 DN-20I11
Mmchr1_NOD_IDD5_3
bQ20I11
CU368746.3
finished
38 DN-108B7
Mmchr1_NOD_IDD5_3
bQ108B7
CU405881.7
finished
39 DN-97F10
Mmchr1_NOD_IDD5_3
bQ97F10
CU442761.5
finished
40 DN-70A17
Mmchr1_NOD_IDD5_3
bQ70A17
CU372923.6
finished
41 DN-39P9
Mmchr1_NOD_IDD5_3
bQ39P9
CU372909.5
finished
42 DN-226F16
Mmchr1_NOD_IDD5_3
bQ226F16
CU372906.4
finished
43 DN-10I6
Mmchr1_NOD_IDD5_3
bQ10I6
CU407006.6
finished
44 DN-162N18
Mmchr1_NOD_IDD5_4
bQ162N18
CU222534.13
finished
45 DN-383O10
Mmchr1_NOD_IDD5_4
bQ383O10
CU442725.4
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 69346 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL671997.10 1 69346 +
69347 177519 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL672024.9 2001 110173 +
177520 227519 3 N 50000 contig yes
227520 389662 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL596283.10 1 162143 +
389663 517181 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL645951.20 2001 129519 +
517182 567181 6 N 50000 contig yes
567182 708117 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AL645946.6 1 140936 +
708118 754323 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AL645986.6 2001 48206 +
754324 804323 9 N 50000 contig yes
804324 1003859 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 AL683801.10 1 199536 +
1003860 1092775 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU407129.10 1 88916 +
1092776 1246722 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU392853.2 1 153947 -
1246723 1410172 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU406962.8 2001 165450 +
1410173 1440549 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU424488.5 2001 32377 +
1440550 1582810 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU368751.6 2001 144261 +
1582811 1756443 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU442724.6 2001 175633 +
1756444 1862597 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU424489.10 2001 108154 +
1862598 2021182 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU392848.5 2001 160585 +
2021183 2092795 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU442760.6 2001 73613 +
2092796 2158783 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU329676.6 2001 67988 +
2158784 2337323 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU302198.4 2001 180540 +
2337324 2488498 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU407305.6 2001 153175 +
2488499 2631147 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU457480.8 2001 144649 +
2631148 2742851 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU459074.36 2001 113704 +
2742852 2861880 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU372918.5 2001 121029 +
2861881 2882796 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU369554.5 2001 22916 +
2882797 2938748 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU372922.5 2001 57952 +
2938749 3108295 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU372910.8 2001 171547 +
3108296 3246073 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU372905.3 2001 139778 +
3246074 3247436 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU468163.3 2001 3363 +
3247437 3412350 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU392847.12 2001 166914 +
3412351 3489301 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 32 CU468299.2 2001 78951 +
3489302 3539301 33 N 50000 contig yes
3539302 3670653 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU392849.6 1 131352 +
3670654 3733918 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU459008.2 2001 65265 +
3733919 3790443 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU459207.8 2001 58525 +
3790444 3947770 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU368746.3 1 157327 -
3947771 4106925 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU405881.7 7568 166722 +
4106926 4150187 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU442761.5 2001 45262 +
4150188 4294639 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU372923.6 1996 146447 +
4294640 4459790 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU372909.5 2001 167151 +
4459791 4619427 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU372906.4 2001 161637 +
4619428 4764816 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU407006.6 2001 147389 +
4764817 4964682 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU222534.13 1 199866 +
4964683 5090843 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 45 CU442725.4 2001 128161 +

Details

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Statistics

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Clone Summary

Number of gaps
4
Gap types
type-2
4
Total clones
41
Clone HTGS Phases
finished
41
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
73,561
Total finished length of fin clones w/ overlap
4,964,405
Total finished length of fin clones w/o overlap
4,890,844
Total overlap length of fin+unfin clones
73,561
Total finished length of fin+unfin clones w/ overlap
4,964,405
Total finished length of fin+unfin clones w/o overlap
4,890,844

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Other links

* quick link - http://q.sanger.ac.uk/rr0r0ewa