ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__NOD_MrkTac__3 (TPF updated: 2015-09-04)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DN-144H19
Mmchr3_NOD_IDD3_1
bQ144H19
AL645966.30
finished
2 DN-452A22
Mmchr3_NOD_IDD3_1
bQ452A22
AL645982.26
finished
  GAP (type-3) length unknown    
4 DN-25M4
Mmchr3_NODMrkTac_ctg1
bQ25M4
AL645968.6
finished
  GAP (type-3) length unknown    
6 DN-316O2
Mmchr3_NODMrkTac_ctg2
bQ316O2
AL772247.19
finished
7 DN-258M5
Mmchr3_NODMrkTac_ctg2
bQ258M5
AL645970.15
finished
  GAP (type-3) length unknown    
9 DN-240H8
Mmchr3_NOD_IDD10_1
bQ240H8
AL645985.30
finished
  GAP (type-2) length unknown    
11 DN-384L23
Mmchr3_NOD_IDD10_1
bQ384L23
AL663099.7
finished
12 DN-461G22
Mmchr3_NOD_IDD10_1
bQ461G22
AL669922.5
finished
13 DN-70D7
Mmchr3_NOD_IDD10_1
bQ70D7
AL669933.6
finished
14 DN-262D11
Mmchr3_NOD_IDD10_1
bQ262D11
AL645760.15
finished
15 DN-340J1
Mmchr3_NOD_IDD10_1
bQ340J1
AL645757.13
finished
  GAP (type-2) length unknown    
17 DN-358O3
Mmchr3_NOD_IDD10_1
bQ358O3
AL669937.11
finished
18 DN-322E23
Mmchr3_NOD_IDD10_1
bQ322E23
AL672281.18
finished
19 DN-127L1
Mmchr3_NOD_IDD10_1
bQ127L1
AL672260.25
finished
  GAP (type-3) length unknown    
21 DN-250O19
Mmchr3_NOD_IDD18_1
bQ250O19
CT010461.9
finished
22 DN-250A21
Mmchr3_NOD_IDD18_1
bQ250A21
CR936849.22
finished
23 DN-127N6
Mmchr3_NOD_IDD18_1
bQ127N6
CR936838.15
finished
24 DN-164L21
Mmchr3_NOD_IDD18_1
bQ164L21
CR938729.13
finished
25 DN-315E9
Mmchr3_NOD_IDD18_1
bQ315E9
CR936848.6
finished
  GAP (type-3) length unknown    
27 DN-252N9
Mmchr3_NOD_IDD18_2
bQ252N9
CU210935.8
finished
28 DN-31A8
Mmchr3_NOD_IDD18_2
bQ31A8
CU210953.7
finished
29 DN-69P21
Mmchr3_NOD_IDD18_2
bQ69P21
CU210868.10
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 161393 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645966.30 1 161393 +
161394 292416 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645982.26 2001 133023 +
292417 342416 3 N 50000 contig no
342417 504237 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AL645968.6 1 161821 -
504238 554237 5 N 50000 contig no
554238 658443 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL772247.19 1 104206 +
658444 797603 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL645970.15 2001 141160 +
797604 847603 8 N 50000 contig no
847604 989264 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AL645985.30 1 141661 +
989265 1039264 10 N 50000 contig yes
1039265 1216399 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL663099.7 1 177135 +
1216400 1223046 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL669922.5 2001 8647 +
1223047 1282859 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL669933.6 2001 61813 +
1282860 1416684 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL645760.15 2001 135825 +
1416685 1548724 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL645757.13 2001 134040 +
1548725 1598724 16 N 50000 contig yes
1598725 1762398 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL669937.11 1 163674 +
1762399 1833918 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL672281.18 2001 73520 +
1833919 2000928 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL672260.25 2001 169010 +
2000929 2050928 20 N 50000 contig no
2050929 2142133 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CT010461.9 1 91205 +
2142134 2293216 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CR936849.22 2001 153083 +
2293217 2466188 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CR936838.15 2001 174972 +
2466189 2597467 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CR938729.13 2001 133279 +
2597468 2740291 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CR936848.6 2001 144824 +
2740292 2790291 26 N 50000 contig no
2790292 2999389 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 CU210935.8 1 209098 +
2999390 3115846 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 CU210953.7 2001 118457 +
3115847 3256721 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 CU210868.10 2001 142875 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
7
Gap types
type-2
2
type-3
5
Total clones
22
Clone HTGS Phases
finished
22
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
28,000
Total finished length of fin clones w/ overlap
2,934,721
Total finished length of fin clones w/o overlap
2,906,721
Total overlap length of fin+unfin clones
28,000
Total finished length of fin+unfin clones w/ overlap
2,934,721
Total finished length of fin+unfin clones w/o overlap
2,906,721

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