ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__NOD_MrkTac__3 (TPF updated: 2014-10-20)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DN-144H19
Mmchr3_NOD_IDD3_1
bQ144H19
EPN details
AL645966.30
finished
2 DN-452A22
Mmchr3_NOD_IDD3_1
bQ452A22
EPN details
AL645982.26
finished
  GAP (type-3) length unknown    
4 DN-25M4
Mmchr3_NODMrkTac_ctg1
bQ25M4
EPN details
AL645968.6
finished
  GAP (type-3) length unknown    
6 DN-316O2
Mmchr3_NODMrkTac_ctg2
bQ316O2
EPN details
AL772247.19
finished
7 DN-258M5
Mmchr3_NODMrkTac_ctg2
bQ258M5
EPN details
AL645970.15
finished
  GAP (type-3) length unknown    
9 DN-240H8
Mmchr3_NOD_IDD10_1
bQ240H8
EPN details
AL645985.30
finished
  GAP (type-2) length unknown    
11 DN-384L23
Mmchr3_NOD_IDD10_1
bQ384L23
EPN details
AL663099.7
finished
12 DN-461G22
Mmchr3_NOD_IDD10_1
bQ461G22
EPN details
AL669922.5
finished
13 DN-70D7
Mmchr3_NOD_IDD10_1
bQ70D7
EPN details
AL669933.6
finished
14 DN-262D11
Mmchr3_NOD_IDD10_1
bQ262D11
EPN details
AL645760.15
finished
15 DN-340J1
Mmchr3_NOD_IDD10_1
bQ340J1
EPN details
AL645757.13
finished
  GAP (type-2) length unknown    
17 DN-358O3
Mmchr3_NOD_IDD10_1
bQ358O3
EPN details
AL669937.11
finished
18 DN-322E23
Mmchr3_NOD_IDD10_1
bQ322E23
EPN details
AL672281.18
finished
19 DN-127L1
Mmchr3_NOD_IDD10_1
bQ127L1
EPN details
AL672260.25
finished
  GAP (type-3) length unknown    
21 DN-250O19
Mmchr3_NOD_IDD18_1
bQ250O19
EPN details
CT010461.9
finished
22 DN-250A21
Mmchr3_NOD_IDD18_1
bQ250A21
EPN details
CR936849.22
finished
23 DN-127N6
Mmchr3_NOD_IDD18_1
bQ127N6
EPN details
CR936838.15
finished
24 DN-164L21
Mmchr3_NOD_IDD18_1
bQ164L21
EPN details
CR938729.13
finished
25 DN-315E9
Mmchr3_NOD_IDD18_1
bQ315E9
EPN details
CR936848.6
finished
  GAP (type-3) length unknown    
27 DN-252N9
Mmchr3_NOD_IDD18_2
bQ252N9
EPN details
CU210935.8
finished
28 DN-31A8
Mmchr3_NOD_IDD18_2
bQ31A8
EPN details
CU210953.7
finished
29 DN-69P21
Mmchr3_NOD_IDD18_2
bQ69P21
EPN details
CU210868.10
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 161393 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645966.30 1 161393 +
161394 292416 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645982.26 2001 133023 +
292417 342416 3 N 50000 contig no
342417 504237 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AL645968.6 1 161821 -
504238 554237 5 N 50000 contig no
554238 658443 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL772247.19 1 104206 +
658444 797603 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL645970.15 2001 141160 +
797604 847603 8 N 50000 contig no
847604 989264 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AL645985.30 1 141661 +
989265 1039264 10 N 50000 contig yes
1039265 1216399 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL663099.7 1 177135 +
1216400 1223046 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL669922.5 2001 8647 +
1223047 1282859 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL669933.6 2001 61813 +
1282860 1416684 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL645760.15 2001 135825 +
1416685 1548724 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 15 AL645757.13 2001 134040 +
1548725 1598724 16 N 50000 contig yes
1598725 1762398 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL669937.11 1 163674 +
1762399 1833918 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL672281.18 2001 73520 +
1833919 2000928 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL672260.25 2001 169010 +
2000929 2050928 20 N 50000 contig no
2050929 2142133 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CT010461.9 1 91205 +
2142134 2293216 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CR936849.22 2001 153083 +
2293217 2466188 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CR936838.15 2001 174972 +
2466189 2597467 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CR938729.13 2001 133279 +
2597468 2740291 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 25 CR936848.6 2001 144824 +
2740292 2790291 26 N 50000 contig no
2790292 2999389 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 CU210935.8 1 209098 +
2999390 3115846 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 CU210953.7 2001 118457 +
3115847 3256721 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 CU210868.10 2001 142875 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DN-144H19
Mmchr3_NOD_IDD3_1
bQ144H19
EPN details
Submitted to EMBL
13-JAN-09
AL645966.30
finished
161393 DIL NOD 3' / 5'
161393 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
2 DN-452A22
Mmchr3_NOD_IDD3_1
bQ452A22
EPN details
Submitted to EMBL
13-JAN-09
AL645982.26
finished
133023 DIL NOD        
  GAP (type-3) length unknown                  
4 DN-25M4
Mmchr3_NODMrkTac_ctg1
bQ25M4
EPN details
Submitted to EMBL
13-JAN-09
AL645968.6
finished
161821 DIL NOD        
  GAP (type-3) length unknown                  
6 DN-316O2
Mmchr3_NODMrkTac_ctg2
bQ316O2
EPN details
Submitted to EMBL
13-JAN-09
AL772247.19
finished
104206 DIL NOD 3' / 5'
104206 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
7 DN-258M5
Mmchr3_NODMrkTac_ctg2
bQ258M5
EPN details
Submitted to EMBL
13-JAN-09
AL645970.15
finished
141160 DIL NOD        
  GAP (type-3) length unknown                  
9 DN-240H8
Mmchr3_NOD_IDD10_1
bQ240H8
EPN details
Submitted to EMBL
13-JAN-09
AL645985.30
finished
141661 DIL NOD        
  GAP (type-2) length unknown                  
11 DN-384L23
Mmchr3_NOD_IDD10_1
bQ384L23
EPN details
Submitted to EMBL
13-JAN-09
AL663099.7
finished
177135 DIL NOD 3' / 5'
177135 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
12 DN-461G22
Mmchr3_NOD_IDD10_1
bQ461G22
EPN details
Submitted to EMBL
13-JAN-09
AL669922.5
finished
8647 DIL NOD 3' / 5'
8647 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
13 DN-70D7
Mmchr3_NOD_IDD10_1
bQ70D7
EPN details
Submitted to EMBL
13-JAN-09
AL669933.6
finished
61813 DIL NOD 3' / 5'
61813 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
14 DN-262D11
Mmchr3_NOD_IDD10_1
bQ262D11
EPN details
Submitted to EMBL
13-JAN-09
AL645760.15
finished
135825 DIL NOD 3' / 5'
135825 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
15 DN-340J1
Mmchr3_NOD_IDD10_1
bQ340J1
EPN details
Submitted to EMBL
13-JAN-09
AL645757.13
finished
134040 DIL NOD        
  GAP (type-2) length unknown                  
17 DN-358O3
Mmchr3_NOD_IDD10_1
bQ358O3
EPN details
Submitted to EMBL
13-JAN-09
AL669937.11
finished
163674 DIL NOD 3' / 5'
163674 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
18 DN-322E23
Mmchr3_NOD_IDD10_1
bQ322E23
EPN details
Submitted to EMBL
13-JAN-09
AL672281.18
finished
73520 DIL NOD 3' / 5'
73520 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
19 DN-127L1
Mmchr3_NOD_IDD10_1
bQ127L1
EPN details
Submitted to EMBL
13-JAN-09
AL672260.25
finished
169010 DIL NOD        
  GAP (type-3) length unknown                  
21 DN-250O19
Mmchr3_NOD_IDD18_1
bQ250O19
EPN details
Submitted to EMBL
13-JAN-09
CT010461.9
finished
91205 DIL NOD 3' / 5'
91205 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
22 DN-250A21
Mmchr3_NOD_IDD18_1
bQ250A21
EPN details
Submitted to EMBL
13-JAN-09
CR936849.22
finished
153083 DIL NOD 3' / 5'
153083 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
23 DN-127N6
Mmchr3_NOD_IDD18_1
bQ127N6
EPN details
Submitted to EMBL
13-JAN-09
CR936838.15
finished
174972 DIL NOD 3' / 5'
174972 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
24 DN-164L21
Mmchr3_NOD_IDD18_1
bQ164L21
EPN details
Submitted to EMBL
13-JAN-09
CR938729.13
finished
133279 DIL NOD 3' / 5'
133279 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
25 DN-315E9
Mmchr3_NOD_IDD18_1
bQ315E9
EPN details
Submitted to EMBL
13-JAN-09
CR936848.6
finished
144824 DIL NOD        
  GAP (type-3) length unknown                  
27 DN-252N9
Mmchr3_NOD_IDD18_2
bQ252N9
EPN details
Submitted to EMBL
13-JAN-09
CU210935.8
finished
209098 DIL NOD 3' / 5'
209098 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
28 DN-31A8
Mmchr3_NOD_IDD18_2
bQ31A8
EPN details
Submitted to EMBL
13-JAN-09
CU210953.7
finished
118457 DIL NOD 3' / 5'
118457 / 2001
- / -
2000
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
29 DN-69P21
Mmchr3_NOD_IDD18_2
bQ69P21
EPN details
Submitted to EMBL
13-JAN-09
CU210868.10
finished
142875 DIL NOD        

Statistics

Clone Summary

Number of gaps
7
Gap types
type-2
2
type-3
5
Total clones
22
Clone HTGS Phases
finished
22
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
28,000
Total finished length of fin clones w/ overlap
2,934,721
Total finished length of fin clones w/o overlap
2,906,721
Total overlap length of fin+unfin clones
28,000
Total finished length of fin+unfin clones w/ overlap
2,934,721
Total finished length of fin+unfin clones w/o overlap
2,906,721

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Other links

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