ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__NOD_MrkTac__4 (TPF updated: 2017-06-27)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DN-232I22
Mmchr4_NOD_IDD9_1
bQ232I22
CU372907.16
finished
2 DN-240L13
Mmchr4_NOD_IDD9_1
bQ240L13
CU210837.8
finished
3 DN-152A21
Mmchr4_NOD_IDD9_1
bQ152A21
CU467499.7
finished
4 DN-183P11
Mmchr4_NOD_IDD9_1
bQ183P11
CU207361.21
finished
5 DN-258P20
Mmchr4_NOD_IDD9_1
bQ258P20
CU210866.8
finished
6 DN-200E13
Mmchr4_NOD_IDD9_1
bQ200E13
CU210925.4
finished
7 DN-236B5
Mmchr4_NOD_IDD9_1
bQ236B5
CU207362.5
finished
8 DN-321E19
Mmchr4_NOD_IDD9_1
bQ321E19
CU234133.8
finished
9 DN-11J18
Mmchr4_NOD_IDD9_1
bQ11J18
CU302431.10
finished
10 DN-246M21
Mmchr4_NOD_IDD9_1
bQ246M21
CU372919.4
finished
11 DN-400L16
Mmchr4_NOD_IDD9_1
bQ400L16
CU210937.2
finished
12 DN-38P14
Mmchr4_NOD_IDD9_1
bQ38P14
CU210913.6
finished
13 DN-195E12
Mmchr4_NOD_IDD9_1
bQ195E12
CU207347.9
finished
14 DN-229E18
Mmchr4_NOD_IDD9_1
bQ229E18
CU207372.6
finished
15 DN-297B1
Mmchr4_NOD_IDD9_1
bQ297B1
CU210846.9
finished
16 DN-498D17
Mmchr4_NOD_IDD9_1
bQ498D17
CU407307.5
finished
  GAP (type-2) length unknown    
18 DN-191K1
Mmchr4_NOD_IDD9_1
bQ191K1
CU302433.11
finished
19 DN-389N18
Mmchr4_NOD_IDD9_1
bQ389N18
CU207375.12
finished
20 DN-161J11
Mmchr4_NOD_IDD9_1
bQ161J11
CU459017.18
finished
21 DN-431B21
Mmchr4_NOD_IDD9_1
bQ431B21
CU210856.14
finished
  GAP (type-2) length unknown    
23 DN-143J9
Mmchr4_NOD_IDD9_1
bQ143J9
CU457817.14
finished
24 DN-55C18
Mmchr4_NOD_IDD9_1
bQ55C18
CU207418.11
finished
25 DN-189H18
Mmchr4_NOD_IDD9_1
bQ189H18
CU463837.8
finished
26 DN-375D1
Mmchr4_NOD_IDD9_1
bQ375D1
CU210874.8
finished
27 DN-202E11
Mmchr4_NOD_IDD9_1
bQ202E11
CU207386.8
finished
  GAP (type-3) length unknown    
29 DN-96O10
Mmchr4_NOD_IDD9_1M
bQ96O10
CU459015.8
finished
30 DN-230B7
Mmchr4_NOD_IDD9_1M
bQ230B7
CU459014.9
finished
  GAP (type-3) length unknown    
32 DN-165L5
Mmchr4_NOD_IDD9_2
bQ165L5
CU210924.3
finished
33 DN-317I23
Mmchr4_NOD_IDD9_2
bQ317I23
CU372908.5
finished
  GAP (type-2) length unknown    
35 DN-207L8
Mmchr4_NOD_IDD9_2
bQ207L8
CU466551.4
finished
  GAP (type-2) length unknown    
37 DN-398J20
Mmchr4_NOD_IDD9_2
bQ398J20
CU406987.8
finished
  GAP (type-2) length unknown    
39 DN-227O17
Mmchr4_NOD_IDD9_2
bQ227O17
CU463308.8
finished
  GAP (type-2) length unknown    
41 DN-261H7
Mmchr4_NOD_IDD9_2
bQ261H7
CU210855.6
finished
  GAP (type-2) length unknown    
43 DN-169A20
Mmchr4_NOD_IDD9_2
bQ169A20
CU207406.7
finished
44 DN-491P11
Mmchr4_NOD_IDD9_2
bQ491P11
CU210867.6
finished
45 DN-408I5
Mmchr4_NOD_IDD9_2
bQ408I5
CU207376.7
finished
46 DN-51D6
Mmchr4_NOD_IDD9_2
bQ51D6
CU207417.13
finished
47 DN-45G14
Mmchr4_NOD_IDD9_2
bQ45G14
CU210838.16
finished
48 DN-248M11
Mmchr4_NOD_IDD9_2
bQ248M11
CU210865.6
finished
49 DN-205E10
Mmchr4_NOD_IDD9_2
bQ205E10
CU207387.6
finished
50 DN-182F24
Mmchr4_NOD_IDD9_2
bQ182F24
CU207385.10
finished
51 DN-303I20
Mmchr4_NOD_IDD9_2
bQ303I20
CU234132.14
finished
52 DN-129K11
Mmchr4_NOD_IDD9_2
bQ129K11
CU207405.9
finished
53 DN-78H3
Mmchr4_NOD_IDD9_2
bQ78H3
CU210839.7
finished
54 DN-290E6
Mmchr4_NOD_IDD9_2
bQ290E6
CU207415.5
finished
55 DN-383K11
Mmchr4_NOD_IDD9_2
bQ383K11
CU207374.15
finished
56 DN-314K24
Mmchr4_NOD_IDD9_2
bQ314K24
CU302290.9
finished
57 DN-280P13
Mmchr4_NOD_IDD9_2
bQ280P13
CU210912.6
finished
58 DN-105C13
Mmchr4_NOD_IDD9_2
bQ105C13
CU207384.8
finished
59 DN-109K13
Mmchr4_NOD_IDD9_2
bQ109K13
CU459142.15
finished
60 DN-135J18
Mmchr4_NOD_IDD9_2
bQ135J18
CU463327.8
finished
61 DN-79L21
Mmchr4_NOD_IDD9_2
bQ79L21
CU210939.14
finished
62 DN-382D20
Mmchr4_NOD_IDD9_2
bQ382D20
CU207373.6
finished
63 DN-272K19
Mmchr4_NOD_IDD9_2
bQ272K19
CU424443.7
finished
64 DN-192H14
Mmchr4_NOD_IDD9_2
bQ192H14
CU210934.6
finished
65 DN-117C24
Mmchr4_NOD_IDD9_2
bQ117C24
CU210933.11
finished
66 DN-106G2
Mmchr4_NOD_IDD9_2
bQ106G2
CU210932.14
finished
67 DN-129I7
Mmchr4_NOD_IDD9_2
bQ129I7
CU207371.8
finished
68 DN-266N3
Mmchr4_NOD_IDD9_2
bQ266N3
CU207342.6
finished
69 DN-404A18
Mmchr4_NOD_IDD9_2
bQ404A18
CU407306.7
finished
70 DN-225H4
Mmchr4_NOD_IDD9_2
bQ225H4
CU442759.10
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 126360 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU372907.16 1 126360 +
126361 307180 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210837.8 2001 182820 +
307181 439087 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU467499.7 2001 133907 +
439088 471224 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU207361.21 2001 34137 +
471225 672873 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210866.8 2001 203649 +
672874 783322 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210925.4 2001 112449 +
783323 903071 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU207362.5 2001 121749 +
903072 1022851 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU234133.8 2001 121780 +
1022852 1145204 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU302431.10 2001 124353 +
1145205 1147198 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU372919.4 2001 3994 +
1147199 1310757 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210937.2 2001 165559 +
1310758 1429367 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210913.6 2001 120610 +
1429368 1598831 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU207347.9 2001 171464 +
1598832 1737433 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU207372.6 2001 140602 +
1737434 1870343 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210846.9 2001 134910 +
1870344 1939298 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU407307.5 2001 70955 +
1939299 1989298 17 N 50000 contig yes
1989299 2010425 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CU302433.11 1 21127 +
2010426 2199462 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CU207375.12 2001 191037 +
2199463 2271565 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CU459017.18 2001 74103 +
2271566 2405918 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CU210856.14 2001 136353 +
2405919 2455918 22 N 50000 contig yes
2455919 2543367 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU457817.14 1 87449 +
2543368 2738758 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU207418.11 1 195391 -
2738759 2846412 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU463837.8 2001 109654 +
2846413 2899266 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU210874.8 2001 54854 +
2899267 3050841 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU207386.8 2001 153575 +
3050842 3100841 28 N 50000 contig no
3100842 3304155 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 CU459015.8 1 203314 +
3304156 3316442 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 CU459014.9 183003 195289 +
3316443 3366442 31 N 50000 contig no
3366443 3526670 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 33 CU210924.3 1 160228 -
3526671 3602632 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 33 CU372908.5 2001 77962 +
3602633 3652632 34 N 50000 contig yes
3652633 3793584 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 CU466551.4 1 140952 +
3793585 3843584 36 N 50000 contig yes
3843585 4059258 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 CU406987.8 1 215674 +
4059259 4109258 38 N 50000 contig yes
4109259 4306781 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 CU463308.8 1 197523 +
4306782 4356781 40 N 50000 contig yes
4356782 4512295 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 CU210855.6 1 155514 +
4512296 4562295 42 N 50000 contig yes
4562296 4756172 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207406.7 1 193877 +
4756173 4808548 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU210867.6 2001 54376 +
4808549 4919831 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207376.7 2001 113283 +
4919832 5074866 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207417.13 2001 157035 +
5074867 5211868 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU210838.16 2001 139002 +
5211869 5359682 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU210865.6 43639 191452 +
5359683 5398256 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207387.6 2001 40574 +
5398257 5519073 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207385.10 2001 122817 +
5519074 5673491 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU234132.14 2001 156418 +
5673492 5803549 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207405.9 2001 132058 +
5803550 5942147 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU210839.7 2001 140598 +
5942148 6136162 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207415.5 2001 196015 +
6136163 6227300 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207374.15 2001 93138 +
6227301 6336602 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU302290.9 2001 111302 +
6336603 6419274 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU210912.6 2001 84672 +
6419275 6571867 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207384.8 2001 154593 +
6571868 6693755 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU459142.15 97275 219162 +
6693756 6807577 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU463327.8 2001 115822 +
6807578 6988049 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU210939.14 2001 182472 +
6988050 7098666 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207373.6 2001 112617 +
7098667 7176424 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU424443.7 2001 79758 +
7176425 7350983 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU210934.6 2001 176559 +
7350984 7525126 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU210933.11 2001 176143 +
7525127 7602602 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU210932.14 2001 79476 +
7602603 7700637 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207371.8 2001 100035 +
7700638 7886059 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU207342.6 2001 187422 +
7886060 7936066 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU407306.7 2001 52007 +
7936067 8100134 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 70 CU442759.10 2001 166068 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
9
Gap types
type-2
7
type-3
2
Total clones
61
Clone HTGS Phases
finished
61
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
419,822
Total finished length of fin clones w/ overlap
8,070,048
Total finished length of fin clones w/o overlap
7,650,226
Total overlap length of fin+unfin clones
419,822
Total finished length of fin+unfin clones w/ overlap
8,070,048
Total finished length of fin+unfin clones w/o overlap
7,650,226

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