ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__CAST_Ei__Y (TPF updated: 2014-07-29)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH26-75A4
CAST/Ei_MmchrY_ctg1
bMMC75A4
AC184106.1
finished
  GAP (type-3) length unknown    
3 CH26-73N11
CAST/Ei_MmchrY_ctg2
bMMC73N11
AC184108.1
finished
  GAP (type-3) length unknown    
5 CH26-87M2
CAST/Ei_MmchrY_ctg3
bMMC87M2
AC185963.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 189119 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC184106.1 1 189119 +
189120 239119 2 N 50000 contig no
239120 443782 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AC184108.1 1 204663 +
443783 493782 4 N 50000 contig no
493783 689796 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AC185963.1 1 196014 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH26-75A4
CAST/Ei_MmchrY_ctg1
bMMC75A4
-
-
AC184106.1
finished
189119 CHORI-26        
  GAP (type-3) length unknown                  
3 CH26-73N11
CAST/Ei_MmchrY_ctg2
bMMC73N11
-
-
AC184108.1
finished
204663 CHORI-26        
  GAP (type-3) length unknown                  
5 CH26-87M2
CAST/Ei_MmchrY_ctg3
bMMC87M2
-
-
AC185963.1
finished
196014 CHORI-26        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
589,796
Total finished length of fin clones w/o overlap
589,796
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
589,796
Total finished length of fin+unfin clones w/o overlap
589,796

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Other links

* quick link - http://q.sanger.ac.uk/nned5j3z