ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__CAST_Ei__11 (TPF updated: 2017-10-20)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH26-243M20
CAST/Ei_Mmchr11_ctg1
bMMC243M20
CU695226.4
finished
2 CH26-455J9
CAST/Ei_Mmchr11_ctg1
bMMC455J9
CU695230.11
finished
  GAP (type-3) length unknown    
4 CH26-333C17
CAST/Ei_Mmchr11_ctg3
bMMC333C17
CU695229.8
finished
  GAP (type-3) length unknown    
6
CAST/EI_MMCHR11_CTG4
LT629147
LT629147.1
finished
  GAP (type-3) length unknown    
8
CAST/EI_MMCHR11_CTG5
LT629148
LT629148.1
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 47168 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU695226.4 1 47168 -
47169 247497 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU695230.11 2001 202329 +
247498 297497 3 N 50000 contig no
297498 483876 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 CU695229.8 1 186379 +
483877 533876 5 N 50000 contig no
533877 928858 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 LT629147.1 1 394982 +
928859 978858 7 N 50000 contig no
978859 1348831 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 LT629148.1 1 369973 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,000
Total finished length of fin clones w/ overlap
1,200,831
Total finished length of fin clones w/o overlap
1,198,831
Total overlap length of fin+unfin clones
2,000
Total finished length of fin+unfin clones w/ overlap
1,200,831
Total finished length of fin+unfin clones w/o overlap
1,198,831

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