ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__CAST_Ei__11 (TPF updated: 2014-07-28)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH26-243M20
CAST/Ei_Mmchr11_ctg1
bMMC243M20
EPN details
CU695226.4
finished
2 CH26-455J9
CAST/Ei_Mmchr11_ctg1
bMMC455J9
EPN details
CU695230.11
finished
  GAP (type-3) length unknown    
4 CH26-333C17
CAST/Ei_Mmchr11_ctg3
bMMC333C17
EPN details
CU695229.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 47168 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU695226.4 1 47168 -
47169 247497 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU695230.11 2001 202329 +
247498 297497 3 N 50000 contig no
297498 483876 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 CU695229.8 1 186379 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH26-243M20
CAST/Ei_Mmchr11_ctg1
bMMC243M20
EPN details
Analysed
07-MAY-08
CU695226.4
finished
47168 CHORI-26 5' / 5'
1 / 2001
- / -
2000
0
Identified
2014-07-28
fetch_ncbi...
humpub
 
2 CH26-455J9
CAST/Ei_Mmchr11_ctg1
bMMC455J9
EPN details
Analysed
07-NOV-08
CU695230.11
finished
202329 CHORI-26        
  GAP (type-3) length unknown                  
4 CH26-333C17
CAST/Ei_Mmchr11_ctg3
bMMC333C17
EPN details
Analysed
17-MAR-09
CU695229.8
finished
186379 CHORI-26        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,000
Total finished length of fin clones w/ overlap
435,876
Total finished length of fin clones w/o overlap
433,876
Total overlap length of fin+unfin clones
2,000
Total finished length of fin+unfin clones w/ overlap
435,876
Total finished length of fin+unfin clones w/o overlap
433,876

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Other links

* quick link - http://q.sanger.ac.uk/yireyzty