ChromoView - clone / Assembly sequencing status
Mouse: Sub region GRC__MOUSE__A_J__13 (TPF updated: 2018-01-16) TPF
#
Clone ext/Contig
Clone int
Acc/Fin
1
A/J_Mmchr13_ctg1
AF367966
AF367966.1
finished
AGP
AGP_S
AGP_E
Rank
Status
Acc.ver
Clone_S
Clone_E
Str
1
100803
1
FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1
AF367966.1
1
100803
+
Details
Component Sanger::HumPub::ChromoView failed to execute
Statistics
Clone Summary
- Number of gaps
- 0
- Total clones
- 1
- Clone HTGS Phases
- finished
- 1
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 0
- Total finished length of fin clones w/ overlap
- 100,803
- Total finished length of fin clones w/o overlap
- 100,803
- Total overlap length of fin+unfin clones
- 0
- Total finished length of fin+unfin clones w/ overlap
- 100,803
- Total finished length of fin+unfin clones w/o overlap
- 100,803
TPF
# | Clone ext/Contig | Clone int | Acc/Fin |
---|---|---|---|
1 | A/J_Mmchr13_ctg1 |
AF367966 |
AF367966.1 finished |
AGP
AGP_S | AGP_E | Rank | Status | Acc.ver | Clone_S | Clone_E | Str |
---|---|---|---|---|---|---|---|
1 | 100803 | 1 | FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 | AF367966.1 | 1 | 100803 | + |
Details
Component Sanger::HumPub::ChromoView failed to execute
Statistics
Clone Summary
- Number of gaps
- 0
- Total clones
- 1
- Clone HTGS Phases
- finished
- 1
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 0
- Total finished length of fin clones w/ overlap
- 100,803
- Total finished length of fin clones w/o overlap
- 100,803
- Total overlap length of fin+unfin clones
- 0
- Total finished length of fin+unfin clones w/ overlap
- 100,803
- Total finished length of fin+unfin clones w/o overlap
- 100,803
Search
Select region
- Chromosomes
- Human (24)
- dtChromosome 1
- dtChromosome 2
- er dtChromosome 3
- dtChromosome 4
- dtChromosome 5
- dtChromosome 6
- dtChromosome 7
- dtChromosome 8
- dtChromosome 9
- dtChromosome 10
- er dtChromosome 11
- dtChromosome 12
- dtChromosome 13
- dtChromosome 14
- dtChromosome 15
- er dtChromosome 16
- er dtChromosome 17
- dtChromosome 18
- dtChromosome 19
- dtChromosome 20
- er dtChromosome 21
- dtChromosome 22
- dtChromosome X
- dtChromosome Y
- Mouse (21)
- dtChromosome 1
- dtChromosome 2
- dtChromosome 3
- dtChromosome 4
- dtChromosome 5
- dtChromosome 6
- dtChromosome 7
- dtChromosome 8
- dtChromosome 9
- dtChromosome 10
- dtChromosome 11
- dtChromosome 12
- dtChromosome 13
- dtChromosome 14
- dtChromosome 15
- dtChromosome 16
- dtChromosome 17
- dtChromosome 18
- dtChromosome 19
- dtChromosome X
- dtChromosome Y
- Zebrafish (26)
- dtChromosome 1
- dtChromosome 2
- dtChromosome 3
- dtChromosome 4
- dtChromosome 5
- dtChromosome 6
- dtChromosome 7
- dtChromosome 8
- dtChromosome 9
- dtChromosome 10
- dtChromosome 11
- dtChromosome 12
- dtChromosome 13
- Chromosome 14
- dtChromosome 15
- dtChromosome 16
- dtChromosome 17
- dtChromosome 18
- dtChromosome 19
- dtChromosome 20
- dtChromosome 21
- dtChromosome 22
- dtChromosome 23
- dtChromosome 24
- dtChromosome 25
- Chromosome U
- Chicken (1)
- Chimp (1)
- Gibbon (1)
- Gorilla (1)
- M.spretus (1)
- M.truncatula (2)
- Opossum (1)
- Pig (21)
- er dtChromosome 1
- er dtChromosome 2
- dtChromosome 3
- dtChromosome 4
- dtChromosome 5
- dtChromosome 6
- er dtChromosome 7
- dtChromosome 8
- dtChromosome 9
- dtChromosome 10
- dtChromosome 11
- dtChromosome 12
- dtChromosome 13
- dtChromosome 14
- dtChromosome 15
- dtChromosome 16
- dtChromosome 17
- dtChromosome 18
- dtChromosome U
- dtChromosome X
- dtChromosome Y
- Platypus (1)
- Rhesus (1)
- S.lycopersicum (1)
- Wallaby (1)
- Human (24)
- Sub regions
- Human (172)
- GRC ALT_REF_LOCI_1 regions (23)
- dtGRC__HUMAN__ALT_REF_LOCI_1__1
- dtGRC__HUMAN__ALT_REF_LOCI_1__2
- dtGRC__HUMAN__ALT_REF_LOCI_1__3
- dtGRC__HUMAN__ALT_REF_LOCI_1__4
- dtGRC__HUMAN__ALT_REF_LOCI_1__5
- dtGRC__HUMAN__ALT_REF_LOCI_1__6
- dtGRC__HUMAN__ALT_REF_LOCI_1__7
- dtGRC__HUMAN__ALT_REF_LOCI_1__8
- dtGRC__HUMAN__ALT_REF_LOCI_1__9
- dtGRC__HUMAN__ALT_REF_LOCI_1__10
- er dtGRC__HUMAN__ALT_REF_LOCI_1__11
- dtGRC__HUMAN__ALT_REF_LOCI_1__12
- dtGRC__HUMAN__ALT_REF_LOCI_1__13
- dtGRC__HUMAN__ALT_REF_LOCI_1__14
- dtGRC__HUMAN__ALT_REF_LOCI_1__15
- dtGRC__HUMAN__ALT_REF_LOCI_1__16
- er dtGRC__HUMAN__ALT_REF_LOCI_1__17
- er dtGRC__HUMAN__ALT_REF_LOCI_1__18
- dtGRC__HUMAN__ALT_REF_LOCI_1__19
- dtGRC__HUMAN__ALT_REF_LOCI_1__20
- dtGRC__HUMAN__ALT_REF_LOCI_1__21
- dtGRC__HUMAN__ALT_REF_LOCI_1__22
- dtGRC__HUMAN__ALT_REF_LOCI_1__X
- GRC ALT_REF_LOCI_10 (1)
- GRC ALT_REF_LOCI_11 (1)
- GRC ALT_REF_LOCI_12 (1)
- GRC ALT_REF_LOCI_13 (1)
- GRC ALT_REF_LOCI_14 (1)
- GRC ALT_REF_LOCI_15 (1)
- GRC ALT_REF_LOCI_16 (1)
- GRC ALT_REF_LOCI_17 (1)
- GRC ALT_REF_LOCI_18 (1)
- GRC ALT_REF_LOCI_19 (1)
- GRC ALT_REF_LOCI_2 regions (16)
- dtGRC__HUMAN__ALT_REF_LOCI_2__1
- dtGRC__HUMAN__ALT_REF_LOCI_2__2
- dtGRC__HUMAN__ALT_REF_LOCI_2__3
- GRC__HUMAN__ALT_REF_LOCI_2__4
- GRC__HUMAN__ALT_REF_LOCI_2__5
- GRC__HUMAN__ALT_REF_LOCI_2__6
- GRC__HUMAN__ALT_REF_LOCI_2__7
- dtGRC__HUMAN__ALT_REF_LOCI_2__8
- dtGRC__HUMAN__ALT_REF_LOCI_2__11
- GRC__HUMAN__ALT_REF_LOCI_2__12
- dtGRC__HUMAN__ALT_REF_LOCI_2__15
- dtGRC__HUMAN__ALT_REF_LOCI_2__17
- dtGRC__HUMAN__ALT_REF_LOCI_2__18
- dtGRC__HUMAN__ALT_REF_LOCI_2__19
- dtGRC__HUMAN__ALT_REF_LOCI_2__22
- dtGRC__HUMAN__ALT_REF_LOCI_2__X
- GRC ALT_REF_LOCI_20 (1)
- GRC ALT_REF_LOCI_21 (1)
- GRC ALT_REF_LOCI_22 (1)
- GRC ALT_REF_LOCI_23 (1)
- GRC ALT_REF_LOCI_24 (1)
- GRC ALT_REF_LOCI_25 (1)
- GRC ALT_REF_LOCI_26 (1)
- GRC ALT_REF_LOCI_27 (1)
- GRC ALT_REF_LOCI_28 (1)
- GRC ALT_REF_LOCI_29 (1)
- GRC ALT_REF_LOCI_3 regions (8)
- GRC ALT_REF_LOCI_30 (1)
- GRC ALT_REF_LOCI_31 (1)
- GRC ALT_REF_LOCI_32 (1)
- GRC ALT_REF_LOCI_33 (1)
- GRC ALT_REF_LOCI_34 (1)
- GRC ALT_REF_LOCI_35 (1)
- GRC ALT_REF_LOCI_36 (1)
- GRC ALT_REF_LOCI_37 (1)
- GRC ALT_REF_LOCI_38 (1)
- GRC ALT_REF_LOCI_39 (1)
- GRC ALT_REF_LOCI_4 regions (5)
- GRC ALT_REF_LOCI_40 (1)
- GRC ALT_REF_LOCI_41 (1)
- GRC ALT_REF_LOCI_42 (1)
- GRC ALT_REF_LOCI_43 (1)
- GRC ALT_REF_LOCI_44 (1)
- GRC ALT_REF_LOCI_45 (1)
- GRC ALT_REF_LOCI_46 (1)
- GRC ALT_REF_LOCI_47 (1)
- GRC ALT_REF_LOCI_48 (1)
- GRC ALT_REF_LOCI_49 (1)
- GRC ALT_REF_LOCI_5 regions (5)
- GRC ALT_REF_LOCI_50 (1)
- GRC ALT_REF_LOCI_6 regions (4)
- GRC ALT_REF_LOCI_7 regions (4)
- GRC ALT_REF_LOCI_8 regions (3)
- GRC ALT_REF_LOCI_9 regions (1)
- GRC PLACEHOLDER regions (16)
- GRC__HUMAN__PLACEHOLDER__1
- GRC__HUMAN__PLACEHOLDER__2
- GRC__HUMAN__PLACEHOLDER__5
- GRC__HUMAN__PLACEHOLDER__6
- GRC__HUMAN__PLACEHOLDER__8
- GRC__HUMAN__PLACEHOLDER__11
- GRC__HUMAN__PLACEHOLDER__14
- GRC__HUMAN__PLACEHOLDER__15
- dtGRC__HUMAN__PLACEHOLDER__16
- GRC__HUMAN__PLACEHOLDER__17
- GRC__HUMAN__PLACEHOLDER__18
- GRC__HUMAN__PLACEHOLDER__19
- GRC__HUMAN__PLACEHOLDER__20
- GRC__HUMAN__PLACEHOLDER__21
- dtGRC__HUMAN__PLACEHOLDER__22
- GRC__HUMAN__PLACEHOLDER__X
- GRC unplaced regions (22)
- MHC regions (8)
- Other regions (16)
- GRC ALT_REF_LOCI_1 regions (23)
- Mouse (107)
- GRC 129P2_OlaHsd regions (1)
- GRC 129S1_SvImJ regions (11)
- GRC__MOUSE__129S1_SvImJ__2
- GRC__MOUSE__129S1_SvImJ__3
- GRC__MOUSE__129S1_SvImJ__5
- GRC__MOUSE__129S1_SvImJ__6
- GRC__MOUSE__129S1_SvImJ__7
- dtGRC__MOUSE__129S1_SvImJ__12
- GRC__MOUSE__129S1_SvImJ__13
- GRC__MOUSE__129S1_SvImJ__14
- GRC__MOUSE__129S1_SvImJ__16
- GRC__MOUSE__129S1_SvImJ__17
- GRC__MOUSE__129S1_SvImJ__X
- GRC 129S2_SvPas regions (1)
- GRC 129S6_SvEvTac regions (10)
- GRC 129S7_SvEvBrd-Hprt-b-m2 (3)
- GRC 129X1_SvJ regions (7)
- GRC AKR_J regions (1)
- GRC A_J regions (1)
- GRC BALB_c regions (2)
- GRC CAST_Ei regions (3)
- GRC MOUSE_UNKNOWN regions (4)
- GRC NOD_MrkTac regions (6)
- GRC NOD_ShiLtJ regions (4)
- GRC PWK_PhJ regions (1)
- GRC RIII regions (2)
- GRC SPRET_Ei regions (3)
- GRC UNPL regions (7)
- GRC WSB_EiJ regions (1)
- GRC unplaced regions (1)
- MHC regions (3)
- NOD regions (20)
- Other regions (15)
- Zebrafish (149)
- AB regions (24)
- H regions (26)
- MHC regions (36)
- MHC-I_1
- MHC-I_2
- MHC-II_2
- MHC-I_3
- MHC-I_4
- MHC-IV_5
- MHC-I_5
- MHC-III_5
- MHC-II_5
- dtMHC-I_6
- MHC-IV_8
- MHC-V_8
- MHC-I_8
- MHC-II_8
- MHC-III_8
- MHC-I_13
- MHC-I_14
- MHC-II_14
- MHC-III_14
- MHC-I_15
- MHC-III_16
- MHC-IV_16
- MHC-II_16
- MHC-I_16
- MHC-V_16
- MHC-I_17
- MHC-II_17
- MHC-I_19
- MHC-II_19
- MHC-I_20
- MHC-III_21
- MHC-II_21
- MHC-I_21
- MHC-I_22
- MHC-II_U
- MHC-I_U
- Other regions (63)
- GRC__ZEBRAFISH__ALT_DRER_TU_2__1
- GRC__ZEBRAFISH__ALT_DRER_TU_3__1
- dtGRC__ZEBRAFISH__ALT_DRER_TU_1__1
- GRC__ZEBRAFISH__ALT_DRER_TU_1__2
- GRC__ZEBRAFISH__ALT_DRER_TU_2__2
- GRC__ZEBRAFISH__ALT_DRER_TU_1__3
- GRC__ZEBRAFISH__ALT_DRER_TU_2__3
- GRC__ZEBRAFISH__ALT_DRER_TU_2__4
- GRC__ZEBRAFISH__ALT_DRER_TU_1__4
- GRC__ZEBRAFISH__ALT_DRER_TU_2__5
- GRC__ZEBRAFISH__ALT_DRER_TU_3__5
- dtGRC__ZEBRAFISH__ALT_DRER_TU_1__5
- GRC__ZEBRAFISH__ALT_DRER_TU_3__6
- GRC__ZEBRAFISH__ALT_DRER_TU_1__6
- dtGRC__ZEBRAFISH__ALT_DRER_TU_4__6
- GRC__ZEBRAFISH__ALT_DRER_TU_2__6
- GRC__ZEBRAFISH__ALT_DRER_TU_2__7
- GRC__ZEBRAFISH__ALT_DRER_TU_1__7
- GRC__ZEBRAFISH__ALT_DRER_TU_2__8
- GRC__ZEBRAFISH__PLACEHOLDER__8
- GRC__ZEBRAFISH__ALT_DRER_TU_1__8
- GRC__ZEBRAFISH__ALT_DRER_TU_3__9
- GRC__ZEBRAFISH__ALT_DRER_TU_1__9
- GRC__ZEBRAFISH__ALT_DRER_TU_2__9
- GRC__ZEBRAFISH__ALT_DRER_TU_1__10
- GRC__ZEBRAFISH__ALT_DRER_TU_2__10
- GRC__ZEBRAFISH__ALT_DRER_TU_1__11
- GRC__ZEBRAFISH__ALT_DRER_TU_2__11
- GRC__ZEBRAFISH__ALT_DRER_TU_4__11
- GRC__ZEBRAFISH__PLACEHOLDER__11
- GRC__ZEBRAFISH__ALT_DRER_TU_3__11
- dtGRC__ZEBRAFISH__ALT_DRER_TU_1__12
- GRC__ZEBRAFISH__ALT_DRER_TU_2__12
- GRC__ZEBRAFISH__ALT_DRER_TU_1__13
- GRC__ZEBRAFISH__ALT_DRER_TU_2__13
- GRC__ZEBRAFISH__ALT_DRER_TU_3__14
- GRC__ZEBRAFISH__ALT_DRER_TU_4__14
- GRC__ZEBRAFISH__ALT_DRER_TU_1__14
- GRC__ZEBRAFISH__ALT_DRER_TU_2__14
- dtGRC__ZEBRAFISH__ALT_DRER_TU_2__15
- GRC__ZEBRAFISH__ALT_DRER_TU_1__15
- GRC__ZEBRAFISH__PLACEHOLDER__16
- GRC__ZEBRAFISH__ALT_DRER_TU_1__16
- GRC__ZEBRAFISH__ALT_DRER_TU_2__16
- dtGRC__ZEBRAFISH__ALT_DRER_TU_2__17
- dtGRC__ZEBRAFISH__ALT_DRER_TU_1__17
- GRC__ZEBRAFISH__ALT_DRER_TU_2__18
- GRC__ZEBRAFISH__ALT_DRER_TU_1__18
- GRC__ZEBRAFISH__ALT_DRER_TU_1__19
- GRC__ZEBRAFISH__ALT_DRER_TU_2__20
- GRC__ZEBRAFISH__ALT_DRER_TU_1__20
- GRC__ZEBRAFISH__ALT_DRER_TU_1__21
- GRC__ZEBRAFISH__ALT_DRER_TU_2__21
- dtGRC__ZEBRAFISH__ALT_DRER_TU_2__22
- dtGRC__ZEBRAFISH__ALT_DRER_TU_1__22
- GRC__ZEBRAFISH__ALT_DRER_TU_2__23
- GRC__ZEBRAFISH__ALT_DRER_TU_1__23
- GRC__ZEBRAFISH__ALT_DRER_TU_1__24
- GRC__ZEBRAFISH__ALT_DRER_TU_2__24
- GRC__ZEBRAFISH__ALT_DRER_TU_1__25
- GRC__ZEBRAFISH__ALT_DRER_TU_2__25
- GRC__ZEBRAFISH__PLACEHOLDER__25
- GRC__ZEBRAFISH__ALT_DRER_TU_1__U
- B.taurus (2)
- Gorilla (1)
- H.melpomene (1)
- M.truncatula (1)
- Pig (8)
- S.harrisii (1)
- Wallaby (1)
- X.tropicalis (1)
- Human (172)
Other links
- Clones in Multiple TPFs
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