ChromoView - clone / Assembly sequencing status - Wellcome Trust Sanger Institute

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ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRCMOUSEA_J__13 (TPF updated: 2014-07-25)

TPF
AGP
Details
Statistics

TPF

#	Clone ext/Contig	Clone int	Acc/Fin
1	A/J_Mmchr13_ctg1	AF367966	AF367966.1 finished

AGP

AGP_S	AGP_E	Rank	Status	Acc.ver	Clone_S	Clone_E	Str
1	100803	1	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1	AF367966.1	1	100803	+

Details

#	Clone ext/Contig	Clone int	Status/Date	Acc/Fin	Length	Library	OL Pos	OL Qual	OL details	Cert
1	A/J_Mmchr13_ctg1	AF367966	- -	AF367966.1 finished	100803	-

Statistics

Clone Summary

Number of gaps: 0
Total clones: 1
Clone HTGS Phases
finished: 1
Number of clones w/o accession: 0

Overlap Summary

Total overlap length of fin clones: 0
Total finished length of fin clones w/ overlap: 100,803
Total finished length of fin clones w/o overlap: 100,803
Total overlap length of fin+unfin clones: 0
Total finished length of fin+unfin clones w/ overlap: 100,803
Total finished length of fin+unfin clones w/o overlap: 100,803

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Chromosomes
- Human (24)
  - Chromosome 1 dt
  - Chromosome 2 dt
  - Chromosome 3er dt
  - Chromosome 4 dt
  - Chromosome 5 dt
  - Chromosome 6 dt
  - Chromosome 7 dt
  - Chromosome 8 dt
  - Chromosome 9 dt
  - Chromosome 10 dt
  - Chromosome 11er dt
  - Chromosome 12 dt
  - Chromosome 13 dt
  - Chromosome 14 dt
  - Chromosome 15 dt
  - Chromosome 16er dt
  - Chromosome 17er dt
  - Chromosome 18 dt
  - Chromosome 19 dt
  - Chromosome 20 dt
  - Chromosome 21er dt
  - Chromosome 22 dt
  - Chromosome X dt
  - Chromosome Y dt
- Mouse (21)
  - Chromosome 1 dt
  - Chromosome 2 dt
  - Chromosome 3 dt
  - Chromosome 4 dt
  - Chromosome 5 dt
  - Chromosome 6 dt
  - Chromosome 7 dt
  - Chromosome 8 dt
  - Chromosome 9 dt
  - Chromosome 10 dt
  - Chromosome 11 dt
  - Chromosome 12 dt
  - Chromosome 13 dt
  - Chromosome 14 dt
  - Chromosome 15 dt
  - Chromosome 16 dt
  - Chromosome 17 dt
  - Chromosome 18 dt
  - Chromosome 19 dt
  - Chromosome X dt
  - Chromosome Y dt
- Zebrafish (26)
  - Chromosome 1 dt
  - Chromosome 2 dt
  - Chromosome 3 dt
  - Chromosome 4 dt
  - Chromosome 5 dt
  - Chromosome 6 dt
  - Chromosome 7 dt
  - Chromosome 8 dt
  - Chromosome 9 dt
  - Chromosome 10 dt
  - Chromosome 11 dt
  - Chromosome 12 dt
  - Chromosome 13 dt
  - Chromosome 14
  - Chromosome 15 dt
  - Chromosome 16 dt
  - Chromosome 17 dt
  - Chromosome 18 dt
  - Chromosome 19 dt
  - Chromosome 20 dt
  - Chromosome 21 dt
  - Chromosome 22 dt
  - Chromosome 23 dt
  - Chromosome 24 dt
  - Chromosome 25 dt
  - Chromosome U
- Chicken (1)
  - Chromosome U
- Chimp (1)
  - Chromosome X dt
- Gibbon (1)
  - Chromosome U
- Gorilla (1)
  - Chromosome U
- M.spretus (1)
  - Chromosome 7
- M.truncatula (2)
  - Chromosome 3er dt
  - Chromosome 8
- Opossum (1)
  - Chromosome 5 dt
- Pig (21)
  - Chromosome 1er dt
  - Chromosome 2er dt
  - Chromosome 3 dt
  - Chromosome 4 dt
  - Chromosome 5 dt
  - Chromosome 6 dt
  - Chromosome 7er dt
  - Chromosome 8 dt
  - Chromosome 9 dt
  - Chromosome 10 dt
  - Chromosome 11 dt
  - Chromosome 12 dt
  - Chromosome 13 dt
  - Chromosome 14 dt
  - Chromosome 15 dt
  - Chromosome 16 dt
  - Chromosome 17 dt
  - Chromosome 18 dt
  - Chromosome U dt
  - Chromosome X dt
  - Chromosome Y dt
- Platypus (1)
  - Chromosome U
- Rhesus (1)
  - Chromosome U
- S.lycopersicum (1)
  - Chromosome 4 dt
- Wallaby (1)
  - Chromosome U dt
Sub regions
- Human (149)
  - GRC ALT_REF_LOCI_1 regions (23)
    - GRC__HUMAN__ALT_REF_LOCI_1__1 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__2 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__3 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__4 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__5 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__6 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__7 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__8 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__9 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__10 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__11er dt
    - GRC__HUMAN__ALT_REF_LOCI_1__12 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__13 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__14 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__15 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__16 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__17er dt
    - GRC__HUMAN__ALT_REF_LOCI_1__18er dt
    - GRC__HUMAN__ALT_REF_LOCI_1__19 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__20 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__21 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__22 dt
    - GRC__HUMAN__ALT_REF_LOCI_1__X dt
  - GRC ALT_REF_LOCI_10 (1)
    - GRC__HUMAN__ALT_REF_LOCI_10__19 dt
  - GRC ALT_REF_LOCI_11 (1)
    - GRC__HUMAN__ALT_REF_LOCI_11__19 dt
  - GRC ALT_REF_LOCI_12 (1)
    - GRC__HUMAN__ALT_REF_LOCI_12__19 dt
  - GRC ALT_REF_LOCI_13 (1)
    - GRC__HUMAN__ALT_REF_LOCI_13__19 dt
  - GRC ALT_REF_LOCI_14 (1)
    - GRC__HUMAN__ALT_REF_LOCI_14__19 dt
  - GRC ALT_REF_LOCI_15 (1)
    - GRC__HUMAN__ALT_REF_LOCI_15__19 dt
  - GRC ALT_REF_LOCI_16 (1)
    - GRC__HUMAN__ALT_REF_LOCI_16__19 dt
  - GRC ALT_REF_LOCI_17 (1)
    - GRC__HUMAN__ALT_REF_LOCI_17__19 dt
  - GRC ALT_REF_LOCI_18 (1)
    - GRC__HUMAN__ALT_REF_LOCI_18__19 dt
  - GRC ALT_REF_LOCI_19 (1)
    - GRC__HUMAN__ALT_REF_LOCI_19__19 dt
  - GRC ALT_REF_LOCI_2 regions (16)
    - GRC__HUMAN__ALT_REF_LOCI_2__1 dt
    - GRC__HUMAN__ALT_REF_LOCI_2__2 dt
    - GRC__HUMAN__ALT_REF_LOCI_2__3 dt
    - GRC__HUMAN__ALT_REF_LOCI_2__4
    - GRC__HUMAN__ALT_REF_LOCI_2__5
    - GRC__HUMAN__ALT_REF_LOCI_2__6
    - GRC__HUMAN__ALT_REF_LOCI_2__7
    - GRC__HUMAN__ALT_REF_LOCI_2__8 dt
    - GRC__HUMAN__ALT_REF_LOCI_2__11
    - GRC__HUMAN__ALT_REF_LOCI_2__12
    - GRC__HUMAN__ALT_REF_LOCI_2__15 dt
    - GRC__HUMAN__ALT_REF_LOCI_2__17 dt
    - GRC__HUMAN__ALT_REF_LOCI_2__18 dt
    - GRC__HUMAN__ALT_REF_LOCI_2__19 dt
    - GRC__HUMAN__ALT_REF_LOCI_2__22 dt
    - GRC__HUMAN__ALT_REF_LOCI_2__X dt
  - GRC ALT_REF_LOCI_20 (1)
    - GRC__HUMAN__ALT_REF_LOCI_20__19 dt
  - GRC ALT_REF_LOCI_21 (1)
    - GRC__HUMAN__ALT_REF_LOCI_21__19 dt
  - GRC ALT_REF_LOCI_22 (1)
    - GRC__HUMAN__ALT_REF_LOCI_22__19 dt
  - GRC ALT_REF_LOCI_23 (1)
    - GRC__HUMAN__ALT_REF_LOCI_23__19 dt
  - GRC ALT_REF_LOCI_24 (1)
    - GRC__HUMAN__ALT_REF_LOCI_24__19 dt
  - GRC ALT_REF_LOCI_25 (1)
    - GRC__HUMAN__ALT_REF_LOCI_25__19 dt
  - GRC ALT_REF_LOCI_26 (1)
    - GRC__HUMAN__ALT_REF_LOCI_26__19 dt
  - GRC ALT_REF_LOCI_27 (1)
    - GRC__HUMAN__ALT_REF_LOCI_27__19 dt
  - GRC ALT_REF_LOCI_28 (1)
    - GRC__HUMAN__ALT_REF_LOCI_28__19 dt
  - GRC ALT_REF_LOCI_29 (1)
    - GRC__HUMAN__ALT_REF_LOCI_29__19 dt
  - GRC ALT_REF_LOCI_3 regions (7)
    - GRC__HUMAN__ALT_REF_LOCI_3__3 dt
    - GRC__HUMAN__ALT_REF_LOCI_3__4 dt
    - GRC__HUMAN__ALT_REF_LOCI_3__6 dt
    - GRC__HUMAN__ALT_REF_LOCI_3__8
    - GRC__HUMAN__ALT_REF_LOCI_3__11 dt
    - GRC__HUMAN__ALT_REF_LOCI_3__19 dt
    - GRC__HUMAN__ALT_REF_LOCI_3__22
  - GRC ALT_REF_LOCI_30 (1)
    - GRC__HUMAN__ALT_REF_LOCI_30__19 dt
  - GRC ALT_REF_LOCI_31 (1)
    - GRC__HUMAN__ALT_REF_LOCI_31__19 dt
  - GRC ALT_REF_LOCI_32 (1)
    - GRC__HUMAN__ALT_REF_LOCI_32__19 dt
  - GRC ALT_REF_LOCI_33 (1)
    - GRC__HUMAN__ALT_REF_LOCI_33__19 dt
  - GRC ALT_REF_LOCI_34 (1)
    - GRC__HUMAN__ALT_REF_LOCI_34__19 dt
  - GRC ALT_REF_LOCI_35 (1)
    - GRC__HUMAN__ALT_REF_LOCI_35__19 dt
  - GRC ALT_REF_LOCI_4 regions (3)
    - GRC__HUMAN__ALT_REF_LOCI_4__3 dt
    - GRC__HUMAN__ALT_REF_LOCI_4__6
    - GRC__HUMAN__ALT_REF_LOCI_4__19 dt
  - GRC ALT_REF_LOCI_5 regions (3)
    - GRC__HUMAN__ALT_REF_LOCI_5__3 dt
    - GRC__HUMAN__ALT_REF_LOCI_5__6 dt
    - GRC__HUMAN__ALT_REF_LOCI_5__19 dt
  - GRC ALT_REF_LOCI_6 regions (3)
    - GRC__HUMAN__ALT_REF_LOCI_6__3 dt
    - GRC__HUMAN__ALT_REF_LOCI_6__6
    - GRC__HUMAN__ALT_REF_LOCI_6__19 dt
  - GRC ALT_REF_LOCI_7 regions (3)
    - GRC__HUMAN__ALT_REF_LOCI_7__3 dt
    - GRC__HUMAN__ALT_REF_LOCI_7__6 dt
    - GRC__HUMAN__ALT_REF_LOCI_7__19
  - GRC ALT_REF_LOCI_8 regions (2)
    - GRC__HUMAN__ALT_REF_LOCI_8__6 dt
    - GRC__HUMAN__ALT_REF_LOCI_8__19 dt
  - GRC ALT_REF_LOCI_9 regions (1)
    - GRC__HUMAN__ALT_REF_LOCI_9__19 dt
  - GRC PLACEHOLDER regions (16)
    - GRC__HUMAN__PLACEHOLDER__1
    - GRC__HUMAN__PLACEHOLDER__2
    - GRC__HUMAN__PLACEHOLDER__5
    - GRC__HUMAN__PLACEHOLDER__6
    - GRC__HUMAN__PLACEHOLDER__8
    - GRC__HUMAN__PLACEHOLDER__11
    - GRC__HUMAN__PLACEHOLDER__14
    - GRC__HUMAN__PLACEHOLDER__15
    - GRC__HUMAN__PLACEHOLDER__16
    - GRC__HUMAN__PLACEHOLDER__17
    - GRC__HUMAN__PLACEHOLDER__18
    - GRC__HUMAN__PLACEHOLDER__19
    - GRC__HUMAN__PLACEHOLDER__20
    - GRC__HUMAN__PLACEHOLDER__21
    - GRC__HUMAN__PLACEHOLDER__22 dt
    - GRC__HUMAN__PLACEHOLDER__X
  - GRC unplaced regions (22)
    - UNPL_1
    - UNPL_2
    - UNPL_3
    - UNPL_4 dt
    - UNPL_5
    - UNPL_7
    - UNPL_8
    - UNPL_9
    - UNPL_10
    - UNPL_11
    - UNPL_13
    - UNPL_14
    - UNPL_15
    - UNPL_16
    - UNPL_17
    - UNPL_18
    - UNPL_19
    - UNPL_20
    - UNPL_21
    - UNPL_22
    - UNPL_U
    - UNPL_Y
  - MHC regions (8)
    - MHC_APD
    - MHC_COX
    - MHC_DBB
    - MHC_MANNer dt
    - MHC_MCF
    - MHC_PGF
    - MHC_QBL
    - MHC_SSTOer dt
  - Other regions (16)
    - LRC_COX_1
    - LRC_PGF_1
    - LRC_COX_2
    - LRC_PGF_2
    - 22p dt
    - LRC_DM1A
    - ems dt
    - euchrom dt
    - GABRB3
    - 20_gaps dt
    - gb1
    - Guy dt
    - huntingtoner dt
    - LRC_MC1A
    - LRC_MC1B
    - peri
- Mouse (105)
  - GRC 129P2_OlaHsd regions (1)
    - GRC__MOUSE__129P2_OlaHsd__19
  - GRC 129S1_SvImJ regions (11)
    - GRC__MOUSE__129S1_SvImJ__2
    - GRC__MOUSE__129S1_SvImJ__3
    - GRC__MOUSE__129S1_SvImJ__5
    - GRC__MOUSE__129S1_SvImJ__6
    - GRC__MOUSE__129S1_SvImJ__7
    - GRC__MOUSE__129S1_SvImJ__12 dt
    - GRC__MOUSE__129S1_SvImJ__13
    - GRC__MOUSE__129S1_SvImJ__14
    - GRC__MOUSE__129S1_SvImJ__16
    - GRC__MOUSE__129S1_SvImJ__17
    - GRC__MOUSE__129S1_SvImJ__X
  - GRC 129S2_SvPas regions (1)
    - GRC__MOUSE__129S2_SvPas__7
  - GRC 129S6_SvEvTac regions (10)
    - GRC__MOUSE__129S6_SvEvTac__1 dt
    - GRC__MOUSE__129S6_SvEvTac__4
    - GRC__MOUSE__129S6_SvEvTac__5
    - GRC__MOUSE__129S6_SvEvTac__8
    - GRC__MOUSE__129S6_SvEvTac__11
    - GRC__MOUSE__129S6_SvEvTac__13
    - GRC__MOUSE__129S6_SvEvTac__15
    - GRC__MOUSE__129S6_SvEvTac__16
    - GRC__MOUSE__129S6_SvEvTac__17
    - GRC__MOUSE__129S6_SvEvTac__X
  - GRC 129S7_SvEvBrd-Hprt-b-m2 (3)
    - GRC__MOUSE__129S7_SvEvBrd-Hprt-b-m2__4
    - GRC__MOUSE__129S7_SvEvBrd-Hprt-b-m2__12
    - GRC__MOUSE__129S7_SvEvBrd-Hprt-b-m2__15
  - GRC 129X1_SvJ regions (7)
    - GRC__MOUSE__129X1_SvJ__1
    - GRC__MOUSE__129X1_SvJ__4
    - GRC__MOUSE__129X1_SvJ__6
    - GRC__MOUSE__129X1_SvJ__11
    - GRC__MOUSE__129X1_SvJ__14
    - GRC__MOUSE__129X1_SvJ__16
    - GRC__MOUSE__129X1_SvJ__17 dt
  - GRC AKR_J regions (1)
    - GRC__MOUSE__AKR_J__Y
  - GRC A_J regions (1)
    - GRC__MOUSE__A_J__13
  - GRC BALB_c regions (2)
    - GRC__MOUSE__BALB_c__7
    - GRC__MOUSE__BALB_c__12
  - GRC CAST_Ei regions (3)
    - GRC__MOUSE__CAST_Ei__11
    - GRC__MOUSE__CAST_Ei__18
    - GRC__MOUSE__CAST_Ei__Y
  - GRC MOUSE_UNKNOWN regions (4)
    - GRC__MOUSE__MOUSE_UNKNOWN__4
    - GRC__MOUSE__MOUSE_UNKNOWN__10
    - GRC__MOUSE__MOUSE_UNKNOWN__17
    - GRC__MOUSE__MOUSE_UNKNOWN__19
  - GRC NOD_MrkTac regions (6)
    - GRC__MOUSE__NOD_MrkTac__1
    - GRC__MOUSE__NOD_MrkTac__3
    - GRC__MOUSE__NOD_MrkTac__4
    - GRC__MOUSE__NOD_MrkTac__11
    - GRC__MOUSE__NOD_MrkTac__17
    - GRC__MOUSE__NOD_MrkTac__U
  - GRC NOD_ShiLtJ regions (4)
    - GRC__MOUSE__NOD_ShiLtJ__1
    - GRC__MOUSE__NOD_ShiLtJ__6
    - GRC__MOUSE__NOD_ShiLtJ__11
    - GRC__MOUSE__NOD_ShiLtJ__17
  - GRC RIII regions (2)
    - GRC__MOUSE__RIII__12
    - GRC__MOUSE__RIII__18
  - GRC SPRET_Ei regions (3)
    - GRC__MOUSE__SPRET_Ei__6
    - GRC__MOUSE__SPRET_Ei__7
    - GRC__MOUSE__SPRET_Ei__Y
  - GRC UNPL regions (7)
    - GRC__MOUSE__UNPL__1
    - GRC__MOUSE__UNPL__4
    - GRC__MOUSE__UNPL__5
    - GRC__MOUSE__UNPL__7
    - GRC__MOUSE__UNPL__U
    - GRC__MOUSE__UNPL__X
    - GRC__MOUSE__UNPL__Y
  - GRC unplaced regions (1)
    - UNPL_Y dt
  - MHC regions (3)
    - MHC_129 dt
    - MHC_BL6 dt
    - MHC_BN_PATH dt
  - NOD regions (20)
    - NOD_IDD1
    - CHO_IDD1
    - NOD_IDD10.1
    - CHO_IDD16.1
    - NOD_IDD18.1
    - NOD_IDD18.2
    - NOD_IDD3.1
    - NOD_IDD4.1
    - NOD_IDD4.2
    - CHO_IDD4.2Q
    - CHO_IDD5
    - NOD_IDD5.1
    - NOD_IDD5.3
    - NOD_IDD5.4
    - CHO_IDD6.1+2
    - CHO_IDD6.3
    - NOD_IDD9.1
    - NOD_IDD9.1M
    - NOD_IDD9.2
    - NOD_IDD9.3
  - Other regions (15)
    - MOUSE_UNPL_5
    - WUgaps_16 dt
    - blk6_Abpa
    - Del36H
    - blk6_IDD10
    - blk6_IDD18
    - 129_IDD3
    - blk6_IDD3
    - bk6_IDD5.1
    - 129_MUP
    - 14_proximaler
    - chr6_steeler dt
    - chr5_steel dt
    - MOUSE_UNPL_U
    - MOUSE_UNPL_Y dt
- Zebrafish (88)
  - AB regions (24)
    - AB_1
    - AB_2
    - AB_3
    - AB_5
    - AB_6
    - AB_7 dt
    - AB_8
    - AB_9er dt
    - AB_10
    - AB_11
    - AB_12
    - AB_13
    - AB_14
    - AB_15
    - AB_16
    - AB_17 dt
    - AB_18
    - AB_19 dt
    - AB_20
    - AB_22
    - AB_23
    - AB_24
    - AB_25
    - AB_U
  - H regions (26)
    - H_1
    - H_2
    - H_3
    - H_4
    - H_5er
    - H_6 dt
    - H_7 dt
    - H_8
    - H_9
    - H_10 dt
    - H_11 dt
    - H_12er dt
    - H_13
    - H_14 dt
    - H_15 dt
    - H_16
    - H_17 dt
    - H_18er dt
    - H_19
    - H_20
    - H_21 dt
    - H_22
    - H_23 dt
    - H_24 dt
    - H_25 dt
    - H_U
  - MHC regions (36)
    - MHC-I_1
    - MHC-I_2
    - MHC-II_2
    - MHC-I_3
    - MHC-I_4
    - MHC-IV_5
    - MHC-I_5
    - MHC-III_5
    - MHC-II_5
    - MHC-I_6 dt
    - MHC-IV_8
    - MHC-V_8
    - MHC-I_8
    - MHC-II_8
    - MHC-III_8
    - MHC-I_13
    - MHC-I_14
    - MHC-II_14
    - MHC-III_14
    - MHC-I_15
    - MHC-III_16
    - MHC-IV_16
    - MHC-II_16
    - MHC-I_16
    - MHC-V_16
    - MHC-I_17
    - MHC-II_17
    - MHC-I_19
    - MHC-II_19
    - MHC-I_20
    - MHC-III_21
    - MHC-II_21
    - MHC-I_21
    - MHC-I_22
    - MHC-II_U
    - MHC-I_U
  - Other regions (2)
    - GRC__ZEBRAFISH__PLACEHOLDER__8
    - GRC__ZEBRAFISH__PLACEHOLDER__25
- B.taurus (2)
  - MHC_hap1
  - MHC_hap2
- Gorilla (1)
  - GORILLA_FOSMIDS dt
- H.melpomene (1)
  - HeliM_mim dt
- M.truncatula (1)
  - rel_170706er dt
- Pig (8)
  - CH242_MHC_1 dt
  - CH242_MHC_2
  - ENr232 dt
  - Pig_MHCer dt
  - Pig_MHC-II
  - SSC17_MAX1 dt
  - SSC6_test1 dt
  - SSC7_test2er dt
- S.harrisii (1)
  - Tas_MHC
- Wallaby (1)
  - WALLABY_MHC
- X.tropicalis (1)
  - TROP_RAND dt

Other links

Clones in Multiple TPFs
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