ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129X1_SvJ__17 (TPF updated: 2015-08-28)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 425O18
129X1/SvJ_Mmchr17_ctg2
425O18
AF110520.1
finished
2
129X1/SvJ_Mmchr17_ctg2
AF100956
AF100956.1
finished
3 461G2
129X1/SvJ_Mmchr17_ctg2
461G2
AF027865.1
finished
4
129X1/SvJ_Mmchr17_ctg2
AF050157
AF050157.1
finished
5 29N7
129X1/SvJ_Mmchr17_ctg2
29N7
AF030001.1
finished
6
129X1/SvJ_Mmchr17_ctg2
AF049850
AF049850.1
finished
7 310M6
129X1/SvJ_Mmchr17_ctg2
310M6
AF109906.1
finished
8 213L3
129X1/SvJ_Mmchr17_ctg2
213L3
AF109905.1
finished
9 188A7
129X1/SvJ_Mmchr17_ctg2
188A7
AF109719.2
finished
10 205A4
129X1/SvJ_Mmchr17_ctg2
205A4
AC007080.2
finished
11 384N12
129X1/SvJ_Mmchr17_ctg2
CONTAINER
384N12
AC087217.1
finished
12 PCR_129X1SVJ_AC087217_1
129X1/SvJ_Mmchr17_ctg2
CONTAINED
PCR_129X1SVJ_AC087217_1
FO203517.1
finished
11 384N12
129X1/SvJ_Mmchr17_ctg2
CONTAINER
384N12
AC087217.1
finished
13 214O16
129X1/SvJ_Mmchr17_ctg2
214O16
AF111102.2
finished
14 11M9
129X1/SvJ_Mmchr17_ctg2
11M9
AC087216.1
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 213245 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF110520.1 1 213245 +
213246 436085 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF100956.1 50961 273800 +
436086 552250 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF027865.1 22023 138187 +
552251 772977 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF050157.1 24713 245439 +
772978 974361 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF030001.1 577 201960 +
974362 1124159 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF049850.1 89 149886 +
1124160 1258784 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF109906.1 23781 158405 +
1258785 1362492 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF109905.1 31838 135545 +
1362493 1481292 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF109719.2 946 119745 +
1481293 1521201 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AC007080.2 1 39909 +
1521202 1526415 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AC087217.1 13239 18452 +
1526416 1527580 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 FO203517.1 1 1165 +
1527581 1583991 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AC087217.1 20956 77366 +
1583992 1736643 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF111102.2 5792 158443 +
1736644 1934410 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AC087216.1 28828 226594 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
0
Total clones
14
Clone HTGS Phases
finished
14
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
199,393
Total finished length of fin clones w/ overlap
2,140,938
Total finished length of fin clones w/o overlap
1,941,545
Total overlap length of fin+unfin clones
199,393
Total finished length of fin+unfin clones w/ overlap
2,140,938
Total finished length of fin+unfin clones w/o overlap
1,941,545

Dovetails

# rank accession status length date
1 5 AF030001.1 unfinished 4 Fri, 28 Aug 2015 00:39
2 11 AC087217.1 unfinished 56,411 Fri, 28 Aug 2015 00:39

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* quick link - http://q.sanger.ac.uk/a9cryfb7