ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129X1_SvJ__17 (TPF updated: 2014-09-18)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 425O18
129X1/SvJ_Mmchr17_ctg2
425O18
AF110520.1
finished
2
129X1/SvJ_Mmchr17_ctg2
AF100956
AF100956.1
finished
3 461G2
129X1/SvJ_Mmchr17_ctg2
461G2
AF027865.1
finished
4
129X1/SvJ_Mmchr17_ctg2
AF050157
AF050157.1
finished
5 29N7
129X1/SvJ_Mmchr17_ctg2
29N7
AF030001.1
finished
6
129X1/SvJ_Mmchr17_ctg2
AF049850
AF049850.1
finished
7 310M6
129X1/SvJ_Mmchr17_ctg2
310M6
AF109906.1
finished
8 213L3
129X1/SvJ_Mmchr17_ctg2
213L3
AF109905.1
finished
9 188A7
129X1/SvJ_Mmchr17_ctg2
188A7
AF109719.2
finished
10 205A4
129X1/SvJ_Mmchr17_ctg2
205A4
AC007080.2
finished
11 384N12
129X1/SvJ_Mmchr17_ctg2
CONTAINER
384N12
AC087217.1
finished
12 PCR_129X1SVJ_AC087217_1
129X1/SvJ_Mmchr17_ctg2
CONTAINED
PCR_129X1SVJ_AC087217_1
EPN details
FO203517.1
finished
11 384N12
129X1/SvJ_Mmchr17_ctg2
CONTAINER
384N12
AC087217.1
finished
13 214O16
129X1/SvJ_Mmchr17_ctg2
214O16
AF111102.2
finished
14 11M9
129X1/SvJ_Mmchr17_ctg2
11M9
AC087216.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 213245 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF110520.1 1 213245 +
213246 436085 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF100956.1 50961 273800 +
436086 552250 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF027865.1 22023 138187 +
552251 772977 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF050157.1 24713 245439 +
772978 974361 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF030001.1 577 201960 +
974362 1124159 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF049850.1 89 149886 +
1124160 1258784 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF109906.1 23781 158405 +
1258785 1362492 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF109905.1 31838 135545 +
1362493 1481292 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF109719.2 946 119745 +
1481293 1521201 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AC007080.2 1 39909 +
1521202 1526415 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AC087217.1 13239 18452 +
1526416 1527580 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 FO203517.1 1 1165 +
1527581 1583991 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AC087217.1 20956 77366 +
1583992 1736643 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AF111102.2 5792 158443 +
1736644 1934410 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 15 AC087216.1 28828 226594 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 425O18
129X1/SvJ_Mmchr17_ctg2
425O18
-
-
AF110520.1
finished
213245 - 3' / 5'
213245 / 50961
- / -
50959
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
2
129X1/SvJ_Mmchr17_ctg2
AF100956
-
-
AF100956.1
finished
273800 - 3' / 5'
273800 / 22023
- / -
22022
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
3 461G2
129X1/SvJ_Mmchr17_ctg2
461G2
-
-
AF027865.1
finished
138187 - 3' / 5'
138187 / 24713
- / -
24712
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
4
129X1/SvJ_Mmchr17_ctg2
AF050157
-
-
AF050157.1
finished
245439 - 3' / 5'
245439 / 577
- / -
576
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
5 29N7
129X1/SvJ_Mmchr17_ctg2
29N7
-
-
AF030001.1
finished
201964 - 3' / 5'
201960 / 89
4 / -
88
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
6
129X1/SvJ_Mmchr17_ctg2
AF049850
-
-
AF049850.1
finished
149886 - 3' / 5'
149886 / 23781
- / -
23780
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
7 310M6
129X1/SvJ_Mmchr17_ctg2
310M6
-
-
AF109906.1
finished
158405 - 3' / 5'
158405 / 31838
- / -
31837
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
8 213L3
129X1/SvJ_Mmchr17_ctg2
213L3
-
-
AF109905.1
finished
135545 - 3' / 5'
135545 / 946
- / -
945
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
9 188A7
129X1/SvJ_Mmchr17_ctg2
188A7
-
-
AF109719.2
finished
120990 - 3' / 5'
119745 / 1
- / -
1245
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
10 205A4
129X1/SvJ_Mmchr17_ctg2
205A4
-
-
AC007080.2
finished
39909 - 3' / 5'
39909 / 13239
- / -
13237
0.01
Identified
2014-09-18
fetch_ncbi...
humpub
 
11 384N12
129X1/SvJ_Mmchr17_ctg2
CONTAINER
384N12
-
-
AC087217.1
finished
77366 - 3' / 5'
18452 / 1
56411 / -
1165
100
Identified
2014-09-18
fetch_ncbi...
humpub
 
12 PCR_129X1SVJ_AC087217_1
129X1/SvJ_Mmchr17_ctg2
CONTAINED
PCR_129X1SVJ_AC087217_1
EPN details
Analysed
18-SEP-12
FO203517.1
finished
1165 - 3' / 5'
1165 / 20956
- / 18452
1165
100
Identified
2014-09-18
fetch_ncbi...
humpub
 
11 384N12
129X1/SvJ_Mmchr17_ctg2
CONTAINER
384N12
-
-
AC087217.1
finished
77366 - 3' / 5'
77366 / 5792
- / -
5790
0.04
Identified
2014-09-18
fetch_ncbi...
humpub
 
13 214O16
129X1/SvJ_Mmchr17_ctg2
214O16
-
-
AF111102.2
finished
158443 - 3' / 5'
158443 / 28828
- / -
28827
0.14
Identified
2014-09-18
fetch_ncbi...
humpub
 
14 11M9
129X1/SvJ_Mmchr17_ctg2
11M9
-
-
AC087216.1
finished
226594 -        

Statistics

Clone Summary

Number of gaps
0
Total clones
14
Clone HTGS Phases
finished
14
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
199,393
Total finished length of fin clones w/ overlap
2,140,938
Total finished length of fin clones w/o overlap
1,941,545
Total overlap length of fin+unfin clones
199,393
Total finished length of fin+unfin clones w/ overlap
2,140,938
Total finished length of fin+unfin clones w/o overlap
1,941,545

Dovetails

# rank accession status length date
1 5 AF030001.1 unfinished 4 Thu, 18 Sep 2014 00:52
2 11 AC087217.1 unfinished 56,411 Thu, 18 Sep 2014 00:52

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/a9cryfb7