ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129X1_SvJ__6 (TPF updated: 2014-09-03)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 211L20
129X1/SvJ_Mmchr6_ctg1
211L20
AC007305.40
finished
2 245C12
129X1/SvJ_Mmchr6_ctg1
245C12
AC003061.1
finished
  GAP (type-3) length unknown    
4 27E23
129X1/SvJ_Mmchr6_ctg3
27E23
AF129005.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 214840 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC007305.40 1 214840 +
214841 312568 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC003061.1 1 97728 -
312569 362568 3 N 50000 contig no
362569 561083 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AF129005.1 1 198515 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 211L20
129X1/SvJ_Mmchr6_ctg1
211L20
-
-
AC007305.40
finished
214840 - 3' / 3'
214840 / 97728
- / -
64963
0.03
Identified
2014-09-03
fetch_ncbi...
humpub
 
2 245C12
129X1/SvJ_Mmchr6_ctg1
245C12
-
-
AC003061.1
finished
162691 -        
  GAP (type-3) length unknown                  
4 27E23
129X1/SvJ_Mmchr6_ctg3
27E23
-
-
AF129005.1
finished
198515 -        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
64,963
Total finished length of fin clones w/ overlap
576,046
Total finished length of fin clones w/o overlap
511,083
Total overlap length of fin+unfin clones
64,963
Total finished length of fin+unfin clones w/ overlap
576,046
Total finished length of fin+unfin clones w/o overlap
511,083

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/kl4e8w9x