ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S7_SvEvBrd-Hprt-b-m2__4 (TPF updated: 2015-07-29)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 bMQ-316O4
129S7/SvEvBrd-Hprt-b-m2_Mmchr4_ctg2
bMQ316O4
CT990634.3
finished
2 bMQ-437H1
129S7/SvEvBrd-Hprt-b-m2_Mmchr4_ctg2
bMQ437H1
CT990636.5
finished
  GAP (type-3) length unknown    
4 bMQ-322M12
129S7/SvEvBrd-Hprt-b-m2_Mmchr4_ctg3
bMQ322M12
CT990635.10
finished
  GAP (type-3) length unknown    
6 bMQ-384N20
129S7/SvEvBrd-Hprt-b-m2_Mmchr4_ctg4
bMQ384N20
CU041261.2
finished
  GAP (type-3) length unknown    
8 bMQ-215I17
129S7/SvEvBrd-Hprt-b-m2_Mmchr4_ctg5
bMQ215I17
CU104690.3
finished
  GAP (type-3) length unknown    
10 bMQ-298G7
129S7/SvEvBrd-Hprt-b-m2_Mmchr4_ctg6
bMQ298G7
CU075549.15
finished
11 bMQ-213M5
129S7/SvEvBrd-Hprt-b-m2_Mmchr4_ctg6
bMQ213M5
CT990633.11
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 125945 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CT990634.3 1 125945 +
125946 264822 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CT990636.5 2001 140877 +
264823 314822 3 N 50000 contig no
314823 506517 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 CT990635.10 1 191695 +
506518 556517 5 N 50000 contig no
556518 639735 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 CU041261.2 1 83218 +
639736 689735 7 N 50000 contig no
689736 759488 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 CU104690.3 1 69753 +
759489 809488 9 N 50000 contig no
809489 975396 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 CU075549.15 1 165908 +
975397 1094227 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 CT990633.11 1 118831 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
4
Gap types
type-3
4
Total clones
7
Clone HTGS Phases
finished
7
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
4,000
Total finished length of fin clones w/ overlap
898,227
Total finished length of fin clones w/o overlap
894,227
Total overlap length of fin+unfin clones
4,000
Total finished length of fin+unfin clones w/ overlap
898,227
Total finished length of fin+unfin clones w/o overlap
894,227

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Other links

* quick link - http://q.sanger.ac.uk/3o04yzpt