ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S6_SvEvTac__8 (TPF updated: 2015-08-03)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP21-44K14
129S6/SvEvTac_Mmchr8_ctg1
dM44K14
AY028080.1
finished
  GAP (type-3) length unknown    
3 RP21-657P21
129S6/SvEvTac_Mmchr8_ctg2
dM657P21
AC005743.5
finished
4 RP21-602F10
129S6/SvEvTac_Mmchr8_ctg2
dM602F10
AC006943.25
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 183135 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AY028080.1 1 183135 +
183136 233135 2 N 50000 contig no
233136 418683 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AC005743.5 1 185548 -
418684 484191 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AC006943.25 18527 84034 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
18,526
Total finished length of fin clones w/ overlap
452,717
Total finished length of fin clones w/o overlap
434,191
Total overlap length of fin+unfin clones
18,526
Total finished length of fin+unfin clones w/ overlap
452,717
Total finished length of fin+unfin clones w/o overlap
434,191

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Other links

* quick link - http://q.sanger.ac.uk/mvc5x403