ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S6_SvEvTac__8 (TPF updated: 2014-08-28)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP21-44K14
129S6/SvEvTac_Mmchr8_ctg1
dM44K14
AY028080.1
finished
  GAP (type-3) length unknown    
3 RP21-657P21
129S6/SvEvTac_Mmchr8_ctg2
dM657P21
AC005743.5
finished
4 RP21-602F10
129S6/SvEvTac_Mmchr8_ctg2
dM602F10
AC006943.25
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 183135 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AY028080.1 1 183135 +
183136 233135 2 N 50000 contig no
233136 418683 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AC005743.5 1 185548 -
418684 484191 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AC006943.25 18527 84034 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP21-44K14
129S6/SvEvTac_Mmchr8_ctg1
dM44K14
-
-
AY028080.1
finished
183135 RPCI-21        
  GAP (type-3) length unknown                  
3 RP21-657P21
129S6/SvEvTac_Mmchr8_ctg2
dM657P21
-
-
AC005743.5
finished
185548 RPCI-21 5' / 5'
1 / 18527
- / -
18526
0
Identified
2014-08-27
fetch_ncbi...
humpub
 
4 RP21-602F10
129S6/SvEvTac_Mmchr8_ctg2
dM602F10
-
-
AC006943.25
finished
84034 RPCI-21        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
18,526
Total finished length of fin clones w/ overlap
452,717
Total finished length of fin clones w/o overlap
434,191
Total overlap length of fin+unfin clones
18,526
Total finished length of fin+unfin clones w/ overlap
452,717
Total finished length of fin+unfin clones w/o overlap
434,191

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/mvc5x403