ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S6_SvEvTac__1 (TPF updated: 2014-04-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP22-292L24
129S6/SvEvTac_Mmchr1_ctg1
bD292L24
AC079222.17
finished
2 RP22-318M10
129S6/SvEvTac_Mmchr1_ctg1
bD318M10
AC079223.11
finished
  GAP (type-3) length unknown    
4 RP22-70M05
129S6/SvEvTac_Mmchr1_ctg3
bD70M05
AC034108.26
finished
5 RP22-86N23
129S6/SvEvTac_Mmchr1_ctg3
bD86N23
AC024068.16
finished
  GAP (type-3) length unknown    
7 RP22-225P5
129S6/SvEvTac_Mmchr1_ctg4
bD225P5
AC006944.14
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 159700 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC079222.17 1 159700 +
159701 272653 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC079223.11 1 112953 -
272654 322653 3 N 50000 contig no
322654 497876 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC034108.26 1 175223 +
497877 603908 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC024068.16 51035 157066 +
603909 653908 6 N 50000 contig no
653909 774764 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC006944.14 1 120856 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP22-292L24
129S6/SvEvTac_Mmchr1_ctg1
bD292L24
-
-
AC079222.17
finished
159700 RPCI-22 3' / 3'
159700 / 112953
- / -
24776
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
2 RP22-318M10
129S6/SvEvTac_Mmchr1_ctg1
bD318M10
-
-
AC079223.11
finished
137729 RPCI-22        
  GAP (type-3) length unknown                  
4 RP22-70M05
129S6/SvEvTac_Mmchr1_ctg3
bD70M05
-
-
AC034108.26
finished
175231 RPCI-22 3' / 5'
175223 / 51035
8 / -
51032
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 RP22-86N23
129S6/SvEvTac_Mmchr1_ctg3
bD86N23
-
-
AC024068.16
finished
157066 RPCI-22        
  GAP (type-3) length unknown                  
7 RP22-225P5
129S6/SvEvTac_Mmchr1_ctg4
bD225P5
-
-
AC006944.14
finished
120856 RPCI-22        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
75,808
Total finished length of fin clones w/ overlap
750,582
Total finished length of fin clones w/o overlap
674,774
Total overlap length of fin+unfin clones
75,808
Total finished length of fin+unfin clones w/ overlap
750,582
Total finished length of fin+unfin clones w/o overlap
674,774

Dovetails

# rank accession status length date
1 4 AC034108.26 unfinished 8 Sat, 19 Apr 2014 00:17

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* quick link - http://q.sanger.ac.uk/2do096lu