ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S6_SvEvTac__16 (TPF updated: 2014-07-22)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP21-671I11
129S6/SvEvTac_Mmchr16_ctg1
dM671I11
AC012526.35
finished
2 RP21-184C17
129S6/SvEvTac_Mmchr16_ctg1
dM184C17
AC012399.40
finished
  GAP (type-3) length unknown    
4 RP21-519I24
129S6/SvEvTac_Mmchr16_ctg2
dM519I24
AC008019.60
finished
  GAP (type-3) length unknown    
6 RP21-598K13
129S6/SvEvTac_Mmchr16_ctg3
dM598K13
AC008020.37
finished
  GAP (type-3) length unknown    
8 RP21-312L5
129S6/SvEvTac_Mmchr16_ctg4
dM312L5
AP004390.1
finished
9 RP21-334L19
129S6/SvEvTac_Mmchr16_ctg4
dM334L19
AP004392.1
finished
10 RP21-405K20
129S6/SvEvTac_Mmchr16_ctg4
dM405K20
AP004393.1
finished
  GAP (type-3) length unknown    
12 RP21-639K11
129S6/SvEvTac_Mmchr16_ctg5
dM639K11
AP004639.1
finished
  GAP (type-3) length unknown    
14 RP21-567F3
129S6/SvEvTac_Mmchr16_ctg6
dM567F3
AP003155.1
finished
15 RP21-198O8
129S6/SvEvTac_Mmchr16_ctg6
dM198O8
AP003149.1
finished
16 RP21-340N5
129S6/SvEvTac_Mmchr16_ctg6
dM340N5
AP003151.1
finished
17 RP21-617H16
129S6/SvEvTac_Mmchr16_ctg6
dM617H16
AP003157.2
finished
18 RP21-564B5
129S6/SvEvTac_Mmchr16_ctg6
dM564B5
AP003154.2
finished
19 RP21-485C23
129S6/SvEvTac_Mmchr16_ctg6
dM485C23
AP003153.1
finished
20 RP21-356B22
129S6/SvEvTac_Mmchr16_ctg6
dM356B22
AP003152.1
finished
21 RP21-662M24
129S6/SvEvTac_Mmchr16_ctg6
dM662M24
AP003158.1
finished
22 RP21-56O15
129S6/SvEvTac_Mmchr16_ctg6
dM56O15
AP003156.1
finished
23 RP21-215C1
129S6/SvEvTac_Mmchr16_ctg6
dM215C1
AP003150.1
finished
24 RP21-190J24
129S6/SvEvTac_Mmchr16_ctg6
dM190J24
AP003148.1
finished
25 RP21-326G17
129S6/SvEvTac_Mmchr16_ctg6
dM326G17
AP004391.1
finished
26 RP21-668B6
129S6/SvEvTac_Mmchr16_ctg6
dM668B6
AP005827.1
finished
27 RP21-84A17
129S6/SvEvTac_Mmchr16_ctg6
dM84A17
AP006227.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 186272 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC012526.35 1 186272 +
186273 261336 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC012399.40 1 75064 -
261337 311336 3 N 50000 contig no
311337 501043 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AC008019.60 1 189707 +
501044 551043 5 N 50000 contig no
551044 735087 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 AC008020.37 1 184044 +
735088 785087 7 N 50000 contig no
785088 955340 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 10 AP004390.1 1 170253 +
955341 1060519 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 10 AP004392.1 59066 164244 +
1060520 1159476 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 10 AP004393.1 41592 140548 +
1159477 1209476 11 N 50000 contig no
1209477 1380239 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 AP004639.1 1 170763 +
1380240 1430239 13 N 50000 contig no
1430240 1587624 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003155.1 1 157385 +
1587625 1720883 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003149.1 8553 141811 +
1720884 1867159 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003151.1 13868 160143 +
1867160 1897967 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003157.2 703 31510 +
1897968 2007666 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003154.2 1704 111402 +
2007667 2116679 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003153.1 47432 156444 +
2116680 2227831 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003152.1 78965 190116 +
2227832 2416850 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003158.1 5242 194260 +
2416851 2520679 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003156.1 58300 162128 +
2520680 2641938 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003150.1 29466 150724 +
2641939 2781616 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP003148.1 32496 172173 +
2781617 2895024 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP004391.1 18460 131867 +
2895025 3032128 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP005827.1 77762 214865 +
3032129 3048401 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 27 AP006227.1 5996 22268 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP21-671I11
129S6/SvEvTac_Mmchr16_ctg1
dM671I11
-
-
AC012526.35
finished
186272 RPCI-21 3' / 3'
186272 / 75064
- / -
70974
0.02
Identified
2014-07-22
fetch_ncbi...
humpub
 
2 RP21-184C17
129S6/SvEvTac_Mmchr16_ctg1
dM184C17
-
-
AC012399.40
finished
146040 RPCI-21        
  GAP (type-3) length unknown                  
4 RP21-519I24
129S6/SvEvTac_Mmchr16_ctg2
dM519I24
-
-
AC008019.60
finished
189707 RPCI-21        
  GAP (type-3) length unknown                  
6 RP21-598K13
129S6/SvEvTac_Mmchr16_ctg3
dM598K13
-
-
AC008020.37
finished
184044 RPCI-21        
  GAP (type-3) length unknown                  
8 RP21-312L5
129S6/SvEvTac_Mmchr16_ctg4
dM312L5
-
-
AP004390.1
finished
170253 RPCI-21 3' / 5'
170253 / 59066
- / -
59064
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
9 RP21-334L19
129S6/SvEvTac_Mmchr16_ctg4
dM334L19
-
-
AP004392.1
finished
164244 RPCI-21 3' / 5'
164244 / 41592
- / -
41591
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
10 RP21-405K20
129S6/SvEvTac_Mmchr16_ctg4
dM405K20
-
-
AP004393.1
finished
140548 RPCI-21        
  GAP (type-3) length unknown                  
12 RP21-639K11
129S6/SvEvTac_Mmchr16_ctg5
dM639K11
-
-
AP004639.1
finished
170763 RPCI-21        
  GAP (type-3) length unknown                  
14 RP21-567F3
129S6/SvEvTac_Mmchr16_ctg6
dM567F3
-
-
AP003155.1
finished
157385 RPCI-21 3' / 5'
157385 / 8553
- / -
8552
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
15 RP21-198O8
129S6/SvEvTac_Mmchr16_ctg6
dM198O8
-
-
AP003149.1
finished
141811 RPCI-21 3' / 5'
141811 / 13868
- / -
13866
0.02
Identified
2014-07-22
fetch_ncbi...
humpub
 
16 RP21-340N5
129S6/SvEvTac_Mmchr16_ctg6
dM340N5
-
-
AP003151.1
finished
160143 RPCI-21 3' / 5'
160143 / 703
- / -
702
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
17 RP21-617H16
129S6/SvEvTac_Mmchr16_ctg6
dM617H16
-
-
AP003157.2
finished
31510 RPCI-21 3' / 5'
31510 / 1704
- / -
1702
0.12
Identified
2014-07-22
fetch_ncbi...
humpub
 
18 RP21-564B5
129S6/SvEvTac_Mmchr16_ctg6
dM564B5
-
-
AP003154.2
finished
111402 RPCI-21 3' / 5'
111402 / 47432
- / -
47430
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
19 RP21-485C23
129S6/SvEvTac_Mmchr16_ctg6
dM485C23
-
-
AP003153.1
finished
156444 RPCI-21 3' / 5'
156444 / 78965
- / -
78964
0.01
Identified
2014-07-22
fetch_ncbi...
humpub
 
20 RP21-356B22
129S6/SvEvTac_Mmchr16_ctg6
dM356B22
-
-
AP003152.1
finished
190116 RPCI-21 3' / 5'
190116 / 5242
- / -
5241
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
21 RP21-662M24
129S6/SvEvTac_Mmchr16_ctg6
dM662M24
-
-
AP003158.1
finished
194260 RPCI-21 3' / 5'
194260 / 58300
- / -
58299
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
22 RP21-56O15
129S6/SvEvTac_Mmchr16_ctg6
dM56O15
-
-
AP003156.1
finished
162128 RPCI-21 3' / 5'
162128 / 29466
- / -
29462
0.01
Identified
2014-07-22
fetch_ncbi...
humpub
 
23 RP21-215C1
129S6/SvEvTac_Mmchr16_ctg6
dM215C1
-
-
AP003150.1
finished
150724 RPCI-21 3' / 5'
150724 / 32496
- / -
32495
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
24 RP21-190J24
129S6/SvEvTac_Mmchr16_ctg6
dM190J24
-
-
AP003148.1
finished
172173 RPCI-21 3' / 5'
172173 / 18460
- / -
18459
0.04
Identified
2014-07-22
fetch_ncbi...
humpub
 
25 RP21-326G17
129S6/SvEvTac_Mmchr16_ctg6
dM326G17
-
-
AP004391.1
finished
131867 RPCI-21 3' / 5'
131867 / 77762
- / -
77759
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
26 RP21-668B6
129S6/SvEvTac_Mmchr16_ctg6
dM668B6
-
-
AP005827.1
finished
214865 RPCI-21 3' / 5'
214865 / 5996
- / -
5995
0
Identified
2014-07-22
fetch_ncbi...
humpub
 
27 RP21-84A17
129S6/SvEvTac_Mmchr16_ctg6
dM84A17
-
-
AP006227.1
finished
22268 RPCI-21        

Statistics

Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
22
Clone HTGS Phases
finished
22
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
550,555
Total finished length of fin clones w/ overlap
3,348,967
Total finished length of fin clones w/o overlap
2,798,412
Total overlap length of fin+unfin clones
550,555
Total finished length of fin+unfin clones w/ overlap
3,348,967
Total finished length of fin+unfin clones w/o overlap
2,798,412

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Other links

* quick link - http://q.sanger.ac.uk/dbrnyz6v