ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S6_SvEvTac__X (TPF updated: 2014-10-21)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP21-598F11
129S6/SvEvTac_MmchrX_ctg2
dM598F11
EPN details
AL133400.19
finished
2 RP21-509E24
129S6/SvEvTac_MmchrX_ctg2
dM509E24
EPN details
AL136998.36
finished
3 RP21-429M4
129S6/SvEvTac_MmchrX_ctg2
dM429M4
EPN details
AL355005.3
finished
  GAP (type-3) length unknown    
5 RP21-303O11
129S6/SvEvTac_MmchrX_ctg6
dM303O11
AL136329.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 86674 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL133400.19 1 86674 +
86675 274792 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL136998.36 101 188218 +
274793 414761 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL355005.3 1 139969 -
414762 464761 4 N 50000 contig no
464762 588596 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AL136329.1 1 123835 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP21-598F11
129S6/SvEvTac_MmchrX_ctg2
dM598F11
EPN details
Analysed
03-JUL-01
AL133400.19
finished
86674 RPCI-21 3' / 5'
86674 / 101
- / -
100
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
2 RP21-509E24
129S6/SvEvTac_MmchrX_ctg2
dM509E24
EPN details
Analysed
18-JUN-01
AL136998.36
finished
188218 RPCI-21 3' / 3'
188218 / 139969
- / -
100
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
3 RP21-429M4
129S6/SvEvTac_MmchrX_ctg2
dM429M4
EPN details
Submitted to EMBL
21-SEP-01
AL355005.3
finished
140069 RPCI-21        
  GAP (type-3) length unknown                  
5 RP21-303O11
129S6/SvEvTac_MmchrX_ctg6
dM303O11
-
-
AL136329.1
finished
123835 RPCI-21        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
200
Total finished length of fin clones w/ overlap
538,796
Total finished length of fin clones w/o overlap
538,596
Total overlap length of fin+unfin clones
200
Total finished length of fin+unfin clones w/ overlap
538,796
Total finished length of fin+unfin clones w/o overlap
538,596

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