ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S6_SvEvTac__17 (TPF updated: 2014-11-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP21-374N22
129S6/SvEvTac_Mmchr17_ctg1
dM374N22
EPN details
AL590433.11
finished
  GAP (type-3) length unknown    
3 RP21-383N7
129S6/SvEvTac_Mmchr17_ctg2
dM383N7
EPN details
AL450393.4
finished
4 RP21-538M10
129S6/SvEvTac_Mmchr17_ctg2
dM538M10
EPN details
AL136158.25
finished
5 RP21-639N14
129S6/SvEvTac_Mmchr17_ctg2
dM639N14
EPN details
AL365336.20
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 28130 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL590433.11 1 28130 +
28131 78130 2 N 50000 contig no
78131 118930 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 5 AL450393.4 1 40800 +
118931 307667 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 5 AL136158.25 2001 190737 +
307668 364101 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 5 AL365336.20 2001 58434 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP21-374N22
129S6/SvEvTac_Mmchr17_ctg1
dM374N22
EPN details
Analysed
08-FEB-02
AL590433.11
finished
28130 RPCI-21        
  GAP (type-3) length unknown                  
3 RP21-383N7
129S6/SvEvTac_Mmchr17_ctg2
dM383N7
EPN details
Analysed
28-NOV-01
AL450393.4
finished
40800 RPCI-21 3' / 5'
40800 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
4 RP21-538M10
129S6/SvEvTac_Mmchr17_ctg2
dM538M10
EPN details
Analysed
03-JUL-01
AL136158.25
finished
190737 RPCI-21 3' / 5'
190737 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
5 RP21-639N14
129S6/SvEvTac_Mmchr17_ctg2
dM639N14
EPN details
Analysed
12-OCT-01
AL365336.20
finished
58434 RPCI-21        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
4,000
Total finished length of fin clones w/ overlap
318,101
Total finished length of fin clones w/o overlap
314,101
Total overlap length of fin+unfin clones
4,000
Total finished length of fin+unfin clones w/ overlap
318,101
Total finished length of fin+unfin clones w/o overlap
314,101

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Other links

* quick link - http://q.sanger.ac.uk/yzdel8xp