ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S6_SvEvTac__17 (TPF updated: 2015-04-26)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP21-374N22
129S6/SvEvTac_Mmchr17_ctg1
dM374N22
AL590433.11
finished
  GAP (type-3) length unknown    
3 RP21-383N7
129S6/SvEvTac_Mmchr17_ctg2
dM383N7
AL450393.4
finished
4 RP21-538M10
129S6/SvEvTac_Mmchr17_ctg2
dM538M10
AL136158.25
finished
5 RP21-639N14
129S6/SvEvTac_Mmchr17_ctg2
dM639N14
AL365336.20
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 28130 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL590433.11 1 28130 +
28131 78130 2 N 50000 contig no
78131 118930 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 5 AL450393.4 1 40800 +
118931 307667 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 5 AL136158.25 2001 190737 +
307668 364101 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 5 AL365336.20 2001 58434 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
4,000
Total finished length of fin clones w/ overlap
318,101
Total finished length of fin clones w/o overlap
314,101
Total overlap length of fin+unfin clones
4,000
Total finished length of fin+unfin clones w/ overlap
318,101
Total finished length of fin+unfin clones w/o overlap
314,101

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Other links

* quick link - http://q.sanger.ac.uk/yzdel8xp