ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S1_SvImJ__3 (TPF updated: 2014-04-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CT7-316H20
129S1/SvImJ_Mmchr3_ctg2
bP316H20
EPN details
AL645806.9
finished
2 CT7-315N12
129S1/SvImJ_Mmchr3_ctg2
bP315N12
EPN details
AL645753.11
finished
  GAP (type-3) length unknown    
4 CT7-337H6
129S1/SvImJ_Mmchr3_ctg3
bP337H6
EPN details
AL645807.4
finished
5 CT7-139P23
129S1/SvImJ_Mmchr3_ctg3
bP139P23
EPN details
AL662862.16
finished
  GAP (type-3) length unknown    
7 CT7-56BAC9
129S1/SvImJ_Mmchr3_ctg4
bP56BAC9
AF545858.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 129775 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645806.9 1 129775 +
129776 273369 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645753.11 2001 145594 +
273370 323369 3 N 50000 contig no
323370 524869 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL645807.4 1 201500 +
524870 643677 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL662862.16 2001 120808 +
643678 693677 6 N 50000 contig no
693678 818610 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AF545858.1 1 124933 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CT7-316H20
129S1/SvImJ_Mmchr3_ctg2
bP316H20
EPN details
Submitted to EMBL
13-JAN-09
AL645806.9
finished
129775 CITB-CJ7-B 3' / 5'
129775 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
2 CT7-315N12
129S1/SvImJ_Mmchr3_ctg2
bP315N12
EPN details
Submitted to EMBL
13-JAN-09
AL645753.11
finished
145594 CITB-CJ7-B        
  GAP (type-3) length unknown                  
4 CT7-337H6
129S1/SvImJ_Mmchr3_ctg3
bP337H6
EPN details
Submitted to EMBL
13-JAN-09
AL645807.4
finished
201500 CITB-CJ7-B 3' / 5'
201500 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 CT7-139P23
129S1/SvImJ_Mmchr3_ctg3
bP139P23
EPN details
Submitted to EMBL
13-JAN-09
AL662862.16
finished
120808 CITB-CJ7-B        
  GAP (type-3) length unknown                  
7 CT7-56BAC9
129S1/SvImJ_Mmchr3_ctg4
bP56BAC9
-
-
AF545858.1
finished
124933 CITB-CJ7-B        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
4,000
Total finished length of fin clones w/ overlap
722,610
Total finished length of fin clones w/o overlap
718,610
Total overlap length of fin+unfin clones
4,000
Total finished length of fin+unfin clones w/ overlap
722,610
Total finished length of fin+unfin clones w/o overlap
718,610

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Other links

* quick link - http://q.sanger.ac.uk/ncby7p7c