ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S1_SvImJ__X (TPF updated: 2014-09-02)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CT7-532E7
129S1/SvImJ_MmchrX_ctg3
bP532E7
AC124212.2
finished
2 CT7-271B7
129S1/SvImJ_MmchrX_ctg3
bP271B7
AF131866.2
finished
  GAP (type-3) length unknown    
4 CT7-41M10
129S1/SvImJ_MmchrX_ctg7
bP41M10
AL136328.2
finished
  GAP (type-3) length unknown    
6 Multiple
129S1/SvImJ_MmchrX_ctg10
Multiple
AJ421478.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 109783 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC124212.2 1 109783 +
109784 194271 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AF131866.2 25823 110310 +
194272 244271 3 N 50000 contig no
244272 323056 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AL136328.2 1 78785 +
323057 373056 5 N 50000 contig no
373057 620906 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 AJ421478.1 1 247850 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CT7-532E7
129S1/SvImJ_MmchrX_ctg3
bP532E7
-
-
AC124212.2
finished
109783 CITB-CJ7-B 3' / 5'
109783 / 25823
- / -
25822
0
Identified
2014-09-02
fetch_ncbi...
humpub
 
2 CT7-271B7
129S1/SvImJ_MmchrX_ctg3
bP271B7
-
-
AF131866.2
finished
110310 CITB-CJ7-B        
  GAP (type-3) length unknown                  
4 CT7-41M10
129S1/SvImJ_MmchrX_ctg7
bP41M10
-
-
AL136328.2
finished
78785 CITB-CJ7-B        
  GAP (type-3) length unknown                  
6 Multiple
129S1/SvImJ_MmchrX_ctg10
Multiple
-
-
AJ421478.1
finished
247850 -        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
25,822
Total finished length of fin clones w/ overlap
546,728
Total finished length of fin clones w/o overlap
520,906
Total overlap length of fin+unfin clones
25,822
Total finished length of fin+unfin clones w/ overlap
546,728
Total finished length of fin+unfin clones w/o overlap
520,906

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Other links

* quick link - http://q.sanger.ac.uk/3u1itz1y