ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S1_SvImJ__17 (TPF updated: 2014-07-30)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CT7-5H13
129S1/SvImJ_Mmchr17_ctg2
bP5H13
AY555278.1
finished
2 CT7-585C7
129S1/SvImJ_Mmchr17_ctg2
bP585C7
AF532116.1
finished
3 CT7-255D16
129S1/SvImJ_Mmchr17_ctg2
bP255D16
AF532113.1
finished
4 CT7-10I1
129S1/SvImJ_Mmchr17_ctg2
bP10I1
AF532111.1
finished
5 CT7-592J14
129S1/SvImJ_Mmchr17_ctg2
bP592J14
AC005413.1
finished
6 CT7-76K14
129S1/SvImJ_Mmchr17_ctg2
bP76K14
AC005665.1
finished
7 CT7-9K22
129S1/SvImJ_Mmchr17_ctg2
bP9K22
AF532117.1
finished
8 CT7-553N23
129S1/SvImJ_Mmchr17_ctg2
bP553N23
AF532115.1
finished
9 CT7-20H22
129S1/SvImJ_Mmchr17_ctg2
bP20H22
AF532112.1
finished
10 CT7-544E14
129S1/SvImJ_Mmchr17_ctg2
bP544E14
AF532114.1
finished
11 CT7-573K1
129S1/SvImJ_Mmchr17_ctg2
Cl/Pr bP573K1/bM573K1 swap
EPN details
AL078630.1
finished
  GAP (type-3) length unknown    
13 CT7-87K14
129S1/SvImJ_Mmchr17_ctg3
Cl/Pr bP87K14/bM87K14 swap
EPN details
AL359381.8
finished
14 CT7-332P19
129S1/SvImJ_Mmchr17_ctg3
Cl/Pr bP332P19/bM332P19 swap
EPN details
AL133159.5
finished
  GAP (type-3) length unknown    
16 CT7-350K7
129S1/SvImJ_Mmchr17_ctg4
Cl/Pr bP350K7/bM350K7 swap
EPN details
AL359352.21
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 148334 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AY555278.1 1 148334 +
148335 276465 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532116.1 64741 192871 +
276466 299298 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532113.1 4130 26962 +
299299 474503 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532111.1 3050 178254 +
474504 597335 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AC005413.1 1 122832 -
597336 610598 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AC005665.1 1 13263 -
610599 756305 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532117.1 27582 173288 +
756306 876041 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532115.1 41994 161729 +
876042 959203 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532112.1 89038 172199 +
959204 1035289 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532114.1 77784 153869 +
1035290 1154078 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AL078630.1 35826 154614 +
1154079 1204078 12 N 50000 contig no
1204079 1306995 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 AL359381.8 1 102917 +
1306996 1477644 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 AL133159.5 101 170749 +
1477645 1527644 15 N 50000 contig no
1527645 1690579 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 AL359352.21 1 162935 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CT7-5H13
129S1/SvImJ_Mmchr17_ctg2
bP5H13
-
-
AY555278.1
finished
148334 CITB-CJ7-B 3' / 5'
148334 / 64741
- / -
64739
0.01
Identified
2014-07-30
fetch_ncbi...
humpub
 
2 CT7-585C7
129S1/SvImJ_Mmchr17_ctg2
bP585C7
-
-
AF532116.1
finished
192871 CITB-CJ7-B 3' / 5'
192871 / 4130
- / -
4129
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
3 CT7-255D16
129S1/SvImJ_Mmchr17_ctg2
bP255D16
-
-
AF532113.1
finished
26962 CITB-CJ7-B 3' / 5'
26962 / 3050
- / -
3049
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
4 CT7-10I1
129S1/SvImJ_Mmchr17_ctg2
bP10I1
-
-
AF532111.1
finished
178254 CITB-CJ7-B 3' / 3'
178254 / 122832
- / -
539
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
5 CT7-592J14
129S1/SvImJ_Mmchr17_ctg2
bP592J14
-
-
AC005413.1
finished
123371 CITB-CJ7-B 5' / 3'
1 / 13263
- / -
110923
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
6 CT7-76K14
129S1/SvImJ_Mmchr17_ctg2
bP76K14
-
-
AC005665.1
finished
124186 CITB-CJ7-B 5' / 5'
1 / 27582
- / -
27581
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
7 CT7-9K22
129S1/SvImJ_Mmchr17_ctg2
bP9K22
-
-
AF532117.1
finished
173288 CITB-CJ7-B 3' / 5'
173288 / 41994
- / -
41993
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
8 CT7-553N23
129S1/SvImJ_Mmchr17_ctg2
bP553N23
-
-
AF532115.1
finished
161729 CITB-CJ7-B 3' / 5'
161729 / 89038
- / -
89037
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
9 CT7-20H22
129S1/SvImJ_Mmchr17_ctg2
bP20H22
-
-
AF532112.1
finished
172199 CITB-CJ7-B 3' / 5'
172199 / 77784
- / -
77783
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
10 CT7-544E14
129S1/SvImJ_Mmchr17_ctg2
bP544E14
-
-
AF532114.1
finished
153869 CITB-CJ7-B 3' / 5'
153869 / 35826
- / -
35822
0.02
Identified
2014-07-30
fetch_ncbi...
humpub
 
11 CT7-573K1
129S1/SvImJ_Mmchr17_ctg2
Cl/Pr bP573K1/bM573K1 swap
EPN details
Submitted to EMBL
01-MAY-08
AL078630.1
finished
154614 CITB-CJ7-B        
  GAP (type-3) length unknown                  
13 CT7-87K14
129S1/SvImJ_Mmchr17_ctg3
Cl/Pr bP87K14/bM87K14 swap
EPN details
Analysed
30-JAN-01
AL359381.8
finished
102917 CITB-CJ7-B 3' / 5'
102917 / 101
- / -
100
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
14 CT7-332P19
129S1/SvImJ_Mmchr17_ctg3
Cl/Pr bP332P19/bM332P19 swap
EPN details
Submitted to EMBL
03-MAY-00
AL133159.5
finished
170749 CITB-CJ7-B        
  GAP (type-3) length unknown                  
16 CT7-350K7
129S1/SvImJ_Mmchr17_ctg4
Cl/Pr bP350K7/bM350K7 swap
EPN details
Analysed
19-OCT-01
AL359352.21
finished
162935 CITB-CJ7-B        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
14
Clone HTGS Phases
finished
14
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
455,695
Total finished length of fin clones w/ overlap
2,046,278
Total finished length of fin clones w/o overlap
1,590,583
Total overlap length of fin+unfin clones
455,695
Total finished length of fin+unfin clones w/ overlap
2,046,278
Total finished length of fin+unfin clones w/o overlap
1,590,583

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Other links

* quick link - http://q.sanger.ac.uk/aooyvhsi