ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S1_SvImJ__17 (TPF updated: 2015-07-01)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CT7-5H13
129S1/SvImJ_Mmchr17_ctg2
bP5H13
AY555278.1
finished
2 CT7-585C7
129S1/SvImJ_Mmchr17_ctg2
bP585C7
AF532116.1
finished
3 CT7-255D16
129S1/SvImJ_Mmchr17_ctg2
bP255D16
AF532113.1
finished
4 CT7-10I1
129S1/SvImJ_Mmchr17_ctg2
bP10I1
AF532111.1
finished
5 CT7-592J14
129S1/SvImJ_Mmchr17_ctg2
bP592J14
AC005413.1
finished
6 CT7-76K14
129S1/SvImJ_Mmchr17_ctg2
bP76K14
AC005665.1
finished
7 CT7-9K22
129S1/SvImJ_Mmchr17_ctg2
bP9K22
AF532117.1
finished
8 CT7-553N23
129S1/SvImJ_Mmchr17_ctg2
bP553N23
AF532115.1
finished
9 CT7-20H22
129S1/SvImJ_Mmchr17_ctg2
bP20H22
AF532112.1
finished
10 CT7-544E14
129S1/SvImJ_Mmchr17_ctg2
bP544E14
AF532114.1
finished
11 CT7-573K1
129S1/SvImJ_Mmchr17_ctg2
bP573K1
AL078630.1
finished
  GAP (type-3) length unknown    
13 CT7-87K14
129S1/SvImJ_Mmchr17_ctg3
bP87K14
AL359381.8
finished
14 CT7-332P19
129S1/SvImJ_Mmchr17_ctg3
bP332P19
AL133159.5
finished
  GAP (type-3) length unknown    
16 CT7-350K7
129S1/SvImJ_Mmchr17_ctg4
bP350K7
AL359352.21
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 148334 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AY555278.1 1 148334 +
148335 276465 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532116.1 64741 192871 +
276466 299298 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532113.1 4130 26962 +
299299 474503 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532111.1 3050 178254 +
474504 597335 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AC005413.1 1 122832 -
597336 610598 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AC005665.1 1 13263 -
610599 756305 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532117.1 27582 173288 +
756306 876041 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532115.1 41994 161729 +
876042 959203 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532112.1 89038 172199 +
959204 1035289 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AF532114.1 77784 153869 +
1035290 1154078 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 AL078630.1 35826 154614 +
1154079 1204078 12 N 50000 contig no
1204079 1306995 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 AL359381.8 1 102917 +
1306996 1477644 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 AL133159.5 101 170749 +
1477645 1527644 15 N 50000 contig no
1527645 1690579 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 AL359352.21 1 162935 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
14
Clone HTGS Phases
finished
14
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
455,695
Total finished length of fin clones w/ overlap
2,046,278
Total finished length of fin clones w/o overlap
1,590,583
Total overlap length of fin+unfin clones
455,695
Total finished length of fin+unfin clones w/ overlap
2,046,278
Total finished length of fin+unfin clones w/o overlap
1,590,583

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* quick link - http://q.sanger.ac.uk/aooyvhsi