ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S1_SvImJ__2 (TPF updated: 2014-07-29)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CT7-161K20
129S1/SvImJ_Mmchr2_ctg2
bP161K20
AC068911.38
finished
2 CT7-362C13
129S1/SvImJ_Mmchr2_ctg2
bP362C13
AC068913.22
finished
3 CT7-295G23
129S1/SvImJ_Mmchr2_ctg2
bP295G23
AC079439.26
finished
4 CT7-340L7
129S1/SvImJ_Mmchr2_ctg2
bP340L7
AC079440.38
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 158450 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AC068911.38 1 158450 +
158451 204015 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AC068913.22 1 45565 -
204016 306013 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AC079439.26 13750 115747 +
306014 410905 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AC079440.38 26496 131387 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CT7-161K20
129S1/SvImJ_Mmchr2_ctg2
bP161K20
-
-
AC068911.38
finished
158450 CITB-CJ7-B 3' / 3'
158450 / 45565
- / -
118039
0.1
Identified
2014-07-29
fetch_ncbi...
humpub
 
2 CT7-362C13
129S1/SvImJ_Mmchr2_ctg2
bP362C13
-
-
AC068913.22
finished
163615 CITB-CJ7-B 5' / 5'
1 / 13750
- / -
13749
0
Identified
2014-07-29
fetch_ncbi...
humpub
 
3 CT7-295G23
129S1/SvImJ_Mmchr2_ctg2
bP295G23
-
-
AC079439.26
finished
115747 CITB-CJ7-B 3' / 5'
115747 / 26496
- / -
26493
0.04
Identified
2014-07-29
fetch_ncbi...
humpub
 
4 CT7-340L7
129S1/SvImJ_Mmchr2_ctg2
bP340L7
-
-
AC079440.38
finished
131387 CITB-CJ7-B        

Statistics

Clone Summary

Number of gaps
0
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
158,281
Total finished length of fin clones w/ overlap
569,199
Total finished length of fin clones w/o overlap
410,918
Total overlap length of fin+unfin clones
158,281
Total finished length of fin+unfin clones w/ overlap
569,199
Total finished length of fin+unfin clones w/o overlap
410,918

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Other links

* quick link - http://q.sanger.ac.uk/06sibsec