ChromoView - clone / Assembly sequencing status
Mouse: Sub region GRC__MOUSE__129S1_SvImJ__14 (TPF updated: 2015-03-05) TPF
#
Clone ext/Contig
Clone int
Acc/Fin
1
Multiple
129S1/SvImJ_Mmchr14_ctg3
Multiple
AE008683.1
finished
2
Multiple
129S1/SvImJ_Mmchr14_ctg3
Multiple
AE008684.1
finished
3
Multiple
129S1/SvImJ_Mmchr14_ctg3
Multiple
AE008685.1
finished
4
Multiple
129S1/SvImJ_Mmchr14_ctg3
Multiple
AE008686.1
finished
AGP
AGP_S
AGP_E
Rank
Status
Acc.ver
Clone_S
Clone_E
Str
1
404892
1
FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4
AE008683.1
1
404892
+
404893
804791
2
FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4
AE008684.1
201
400099
+
804792
1204690
3
FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4
AE008685.1
201
400099
+
1204691
1666365
4
FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4
AE008686.1
201
461875
+
Details
#
Clone ext/Contig
Clone int
Status/Date
Acc/Fin
Length
Library
OL Pos
OL Qual
OL details
Cert
1
Multiple
129S1/SvImJ_Mmchr14_ctg3
Multiple
-
-
AE008683.1
finished
404892
-
3' / 5'
404892 / 201
- / -
200
0
Identified
2014-11-12
fetch_ncbi...
humpub
2
Multiple
129S1/SvImJ_Mmchr14_ctg3
Multiple
-
-
AE008684.1
finished
400099
-
3' / 5'
400099 / 201
- / -
200
0
Identified
2014-11-12
fetch_ncbi...
humpub
3
Multiple
129S1/SvImJ_Mmchr14_ctg3
Multiple
-
-
AE008685.1
finished
400099
-
3' / 5'
400099 / 201
- / -
200
0
Identified
2014-11-12
fetch_ncbi...
humpub
4
Multiple
129S1/SvImJ_Mmchr14_ctg3
Multiple
-
-
AE008686.1
finished
461875
-
Statistics
Clone Summary
- Number of gaps
- 0
- Total clones
- 4
- Clone HTGS Phases
- finished
- 4
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 600
- Total finished length of fin clones w/ overlap
- 1,666,965
- Total finished length of fin clones w/o overlap
- 1,666,365
- Total overlap length of fin+unfin clones
- 600
- Total finished length of fin+unfin clones w/ overlap
- 1,666,965
- Total finished length of fin+unfin clones w/o overlap
- 1,666,365
TPF
| # | Clone ext/Contig | Clone int | Acc/Fin |
|---|---|---|---|
| 1 | Multiple 129S1/SvImJ_Mmchr14_ctg3 |
Multiple |
AE008683.1 finished |
| 2 | Multiple 129S1/SvImJ_Mmchr14_ctg3 |
Multiple |
AE008684.1 finished |
| 3 | Multiple 129S1/SvImJ_Mmchr14_ctg3 |
Multiple |
AE008685.1 finished |
| 4 | Multiple 129S1/SvImJ_Mmchr14_ctg3 |
Multiple |
AE008686.1 finished |
AGP
| AGP_S | AGP_E | Rank | Status | Acc.ver | Clone_S | Clone_E | Str |
|---|---|---|---|---|---|---|---|
| 1 | 404892 | 1 | FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 | AE008683.1 | 1 | 404892 | + |
| 404893 | 804791 | 2 | FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 | AE008684.1 | 201 | 400099 | + |
| 804792 | 1204690 | 3 | FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 | AE008685.1 | 201 | 400099 | + |
| 1204691 | 1666365 | 4 | FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 | AE008686.1 | 201 | 461875 | + |
Details
| # | Clone ext/Contig | Clone int | Status/Date | Acc/Fin | Length | Library | OL Pos | OL Qual | OL details | Cert |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Multiple 129S1/SvImJ_Mmchr14_ctg3 |
Multiple |
- - |
AE008683.1 finished |
404892 | - | 3' / 5' 404892 / 201 - / - |
200 0 Identified |
2014-11-12 fetch_ncbi... humpub |
|
| 2 | Multiple 129S1/SvImJ_Mmchr14_ctg3 |
Multiple |
- - |
AE008684.1 finished |
400099 | - | 3' / 5' 400099 / 201 - / - |
200 0 Identified |
2014-11-12 fetch_ncbi... humpub |
|
| 3 | Multiple 129S1/SvImJ_Mmchr14_ctg3 |
Multiple |
- - |
AE008685.1 finished |
400099 | - | 3' / 5' 400099 / 201 - / - |
200 0 Identified |
2014-11-12 fetch_ncbi... humpub |
|
| 4 | Multiple 129S1/SvImJ_Mmchr14_ctg3 |
Multiple |
- - |
AE008686.1 finished |
461875 | - |
Statistics
Clone Summary
- Number of gaps
- 0
- Total clones
- 4
- Clone HTGS Phases
- finished
- 4
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 600
- Total finished length of fin clones w/ overlap
- 1,666,965
- Total finished length of fin clones w/o overlap
- 1,666,365
- Total overlap length of fin+unfin clones
- 600
- Total finished length of fin+unfin clones w/ overlap
- 1,666,965
- Total finished length of fin+unfin clones w/o overlap
- 1,666,365
