ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S1_SvImJ__12 (TPF updated: 2014-09-22)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CT7-199M11
129S1/SvImJ_Mmchr12_ctg1
bP199M11
AF450245.1
finished
2 Multiple
129S1/SvImJ_Mmchr12_ctg1
CONTAINER
Multiple
AJ851868.3
finished
3 PCR_129S1SVLMJ_AJ851868_2
129S1/SvImJ_Mmchr12_ctg1
CONTAINED
PCR_129S1SVLMJ_AJ851868_2
EPN details
FO203502.1
finished
2 Multiple
129S1/SvImJ_Mmchr12_ctg1
CONTAINER
Multiple
AJ851868.3
finished
  GAP (type-3) length unknown    
5 CT7-289B2
129S1/SvImJ_Mmchr12_ctg3
bP289B2
AF481949.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 124254 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AF450245.1 1 124254 -
124255 577066 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AJ851868.3 1140464 1593275 -
577067 577283 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FO203502.1 1 217 -
577284 1716180 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AJ851868.3 1 1138897 -
1716181 1766180 5 N 50000 contig no
1766181 1850430 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 AF481949.1 1 84250 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CT7-199M11
129S1/SvImJ_Mmchr12_ctg1
bP199M11
-
-
AF450245.1
finished
124254 CITB-CJ7-B 5' / 3'
1 / 1593275
- / -
6
0
Identified
2014-09-21
fetch_ncbi...
humpub
 
2 Multiple
129S1/SvImJ_Mmchr12_ctg1
CONTAINER
Multiple
-
-
AJ851868.3
finished
1593281 - 5' / 3'
1140464 / 217
1138897 / -
217
100.46
Identified
2014-09-21
fetch_ncbi...
humpub
 
3 PCR_129S1SVLMJ_AJ851868_2
129S1/SvImJ_Mmchr12_ctg1
CONTAINED
PCR_129S1SVLMJ_AJ851868_2
EPN details
Analysed
20-JUL-12
FO203502.1
finished
217 - 5' / 3'
1 / 1138897
- / 452818
217
100.46
Identified
2014-09-21
fetch_ncbi...
humpub
 
2 Multiple
129S1/SvImJ_Mmchr12_ctg1
CONTAINER
Multiple
-
-
AJ851868.3
finished
1593281 -        
  GAP (type-3) length unknown                  
5 CT7-289B2
129S1/SvImJ_Mmchr12_ctg3
bP289B2
-
-
AF481949.1
finished
84250 CITB-CJ7-B        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
223
Total finished length of fin clones w/ overlap
1,802,002
Total finished length of fin clones w/o overlap
1,801,779
Total overlap length of fin+unfin clones
223
Total finished length of fin+unfin clones w/ overlap
1,802,002
Total finished length of fin+unfin clones w/o overlap
1,801,779

Dovetails

# rank accession status length date
1 2 AJ851868.3 unfinished 1,138,897 Mon, 22 Sep 2014 00:37

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