ChromoView - clone / Assembly sequencing status

Mouse: Sub region GRC__MOUSE__129S1_SvImJ__6 (TPF updated: 2014-10-25)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CT7-388N17
129S1/SvImJ_Mmchr6_ctg1
bP388N17
AC009725.12
finished
  GAP (type-3) length unknown    
3 CT7-596K8
129S1/SvImJ_Mmchr6_ctg5
bP596K8
AC018559.31
finished
4 CT7-541L22
129S1/SvImJ_Mmchr6_ctg5
bP541L22
AC007844.32
finished
5 CT7-369P18
129S1/SvImJ_Mmchr6_ctg5
bP369P18
AC012397.33
finished
6 CT7-555D9
129S1/SvImJ_Mmchr6_ctg5
bP555D9
AC009192.72
finished
7 CT7-67D14
129S1/SvImJ_Mmchr6_ctg5
bP67D14
AC006447.24
finished
8 CT7-141K23
129S1/SvImJ_Mmchr6_ctg5
bP141K23
AC006404.25
finished
9 CT7-453L13
129S1/SvImJ_Mmchr6_ctg5
bP453L13
AC006945.17
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 145152 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC009725.12 1 145152 +
145153 195152 2 N 50000 contig no
195153 306927 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 9 AC018559.31 1 111775 +
306928 436739 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 9 AC007844.32 22505 152316 +
436740 535402 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 9 AC012397.33 41536 140198 +
535403 559794 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 9 AC009192.72 96139 120530 +
559795 675862 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 9 AC006447.24 24387 140454 +
675863 737482 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 9 AC006404.25 81158 142777 +
737483 831293 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 9 AC006945.17 26501 120311 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CT7-388N17
129S1/SvImJ_Mmchr6_ctg1
bP388N17
-
-
AC009725.12
finished
145152 CITB-CJ7-B        
  GAP (type-3) length unknown                  
3 CT7-596K8
129S1/SvImJ_Mmchr6_ctg5
bP596K8
-
-
AC018559.31
finished
111775 CITB-CJ7-B 3' / 5'
111775 / 22505
- / -
22504
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
4 CT7-541L22
129S1/SvImJ_Mmchr6_ctg5
bP541L22
-
-
AC007844.32
finished
152316 CITB-CJ7-B 3' / 5'
152316 / 41536
- / -
41535
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
5 CT7-369P18
129S1/SvImJ_Mmchr6_ctg5
bP369P18
-
-
AC012397.33
finished
140198 CITB-CJ7-B 3' / 5'
140198 / 96139
- / -
96121
0.24
Identified
2014-10-25
fetch_ncbi...
humpub
 
6 CT7-555D9
129S1/SvImJ_Mmchr6_ctg5
bP555D9
-
-
AC009192.72
finished
120530 CITB-CJ7-B 3' / 5'
120530 / 24387
- / -
24386
0.01
Identified
2014-10-25
fetch_ncbi...
humpub
 
7 CT7-67D14
129S1/SvImJ_Mmchr6_ctg5
bP67D14
-
-
AC006447.24
finished
140454 CITB-CJ7-B 3' / 5'
140454 / 81158
- / -
81006
0.2
Identified
2014-10-25
fetch_ncbi...
humpub
 
8 CT7-141K23
129S1/SvImJ_Mmchr6_ctg5
bP141K23
-
-
AC006404.25
finished
142777 CITB-CJ7-B 3' / 5'
142777 / 26501
- / -
26500
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
9 CT7-453L13
129S1/SvImJ_Mmchr6_ctg5
bP453L13
-
-
AC006945.17
finished
120311 CITB-CJ7-B        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
8
Clone HTGS Phases
finished
8
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
292,052
Total finished length of fin clones w/ overlap
1,073,513
Total finished length of fin clones w/o overlap
781,461
Total overlap length of fin+unfin clones
292,052
Total finished length of fin+unfin clones w/ overlap
1,073,513
Total finished length of fin+unfin clones w/o overlap
781,461

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Other links

* quick link - http://q.sanger.ac.uk/z4g0s7zn