ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_8__19 (TPF updated: 2014-12-20)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
Hschr19LRC_PGF2_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
2
Hschr19LRC_PGF2_ctg3_1
CONTAINED
KF511280
KF511280.1
finished
1 CTD-3093M3
Hschr19LRC_PGF2_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
  GAP (type-2) length 18000 bps    
4 CH501-637J10
Hschr19LRC_PGF2_ctg3_1
bPG637J10
EPN details
CU104682.1
finished
  GAP (type-2) length 2000 bps    
6 CH501-554J19
Hschr19LRC_PGF2_ctg3_1
bPG554J19
EPN details
CU467612.4
finished
7 CH501-525F11
Hschr19LRC_PGF2_ctg3_1
bPG525F11
EPN details
CU467816.3
finished
  GAP (type-2) length 100000 bps    
9 CTC-550B14
Hschr19LRC_PGF2_ctg3_1
bK550B14
AC011476.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137190 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 1 137190 +
137191 137602 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 KF511280.1 1 412 +
137603 198018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 137602 198017 +
198019 216018 4 N 18000 contig yes # ALIGN GENUS
216019 363464 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CU104682.1 1 147446 +
363465 365464 6 N 2000 contig yes # ALIGN GENUS
365465 451835 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 CU467612.4 1 86371 +
451836 511801 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 CU467816.3 2001 61966 +
511802 611801 9 N 100000 contig yes # ALIGN GENUS
611802 798865 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 AC011476.8 1 187064 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTD-3093M3
Hschr19LRC_PGF2_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2 3' / 5'
137190 / 1
60416 / -
412
0.24
Identified
2014-11-12
fetch_ncbi...
humpub
 
2
Hschr19LRC_PGF2_ctg3_1
CONTAINED
KF511280
-
-
KF511280.1
finished
412 - 3' / 5'
412 / 137602
- / 137190
412
0.24
Identified
2014-11-12
fetch_ncbi...
humpub
 
1 CTD-3093M3
Hschr19LRC_PGF2_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2        
  GAP (type-2) length 18000 bps                  
4 CH501-637J10
Hschr19LRC_PGF2_ctg3_1
bPG637J10
EPN details
Submitted to EMBL
12-JAN-09
CU104682.1
finished
147446 CHORI-501        
  GAP (type-2) length 2000 bps                  
6 CH501-554J19
Hschr19LRC_PGF2_ctg3_1
bPG554J19
EPN details
Submitted to EMBL
12-JAN-09
CU467612.4
finished
86371 CHORI-501 3' / 5'
86371 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
7 CH501-525F11
Hschr19LRC_PGF2_ctg3_1
bPG525F11
EPN details
QC Checked
06-MAY-09
CU467816.3
finished
61966 CHORI-501        
  GAP (type-2) length 100000 bps                  
9 CTC-550B14
Hschr19LRC_PGF2_ctg3_1
bK550B14
-
-
AC011476.8
finished
187064 CIT-HSP-C        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-2
3
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,411
Total finished length of fin clones w/ overlap
681,276
Total finished length of fin clones w/o overlap
678,865
Total overlap length of fin+unfin clones
2,411
Total finished length of fin+unfin clones w/ overlap
681,276
Total finished length of fin+unfin clones w/o overlap
678,865

Dovetails

# rank accession status length date
1 1 AC012314.8 unfinished 60,416 Sat, 20 Dec 2014 23:25

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* quick link - http://q.sanger.ac.uk/q0v0uhae