ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_7__19 (TPF updated: 2014-12-20)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
Hschr19LRC_PGF1_ctg3_1
bK3093M3
AC012314.8
finished
2 CH501-111L9
Hschr19LRC_PGF1_ctg3_1
bPG111L9
EPN details
CU151838.1
finished
  GAP (type-2) length 5000 bps    
4 CH501-638F6
Hschr19LRC_PGF1_ctg3_1
bPG638F6
EPN details
CU207370.12
finished
5 CH501-541D20
Hschr19LRC_PGF1_ctg3_1
bPG541D20
EPN details
CU024913.1
finished
6 CH501-184J6
Hschr19LRC_PGF1_ctg3_1
bPG184J6
EPN details
CU041368.1
finished
7 CH501-230H20
Hschr19LRC_PGF1_ctg3_1
bPG230H20
EPN details
CU151839.1
finished
8 CTC-550B14
Hschr19LRC_PGF1_ctg3_1
bK550B14
AC011476.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 130178 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC012314.8 1 130178 +
130179 255748 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU151838.1 1 125570 +
255749 260748 3 N 5000 contig yes # ALIGN GENUS
260749 403275 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 CU207370.12 1 142527 +
403276 577004 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 CU024913.1 2001 175729 +
577005 709844 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 CU041368.1 2001 134840 +
709845 897952 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 CU151839.1 8138 196245 +
897953 989486 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 8 AC011476.8 95531 187064 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTD-3093M3
Hschr19LRC_PGF1_ctg3_1
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2 3' / 5'
130178 / 1
- / -
67724
0.57
Identified
2014-11-12
fetch_ncbi...
humpub
 
2 CH501-111L9
Hschr19LRC_PGF1_ctg3_1
bPG111L9
EPN details
Submitted to EMBL
12-JAN-09
CU151838.1
finished
125570 CHORI-501        
  GAP (type-2) length 5000 bps                  
4 CH501-638F6
Hschr19LRC_PGF1_ctg3_1
bPG638F6
EPN details
Submitted to EMBL
12-JAN-09
CU207370.12
finished
142527 CHORI-501 3' / 5'
142527 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
5 CH501-541D20
Hschr19LRC_PGF1_ctg3_1
bPG541D20
EPN details
Submitted to EMBL
12-JAN-09
CU024913.1
finished
175729 CHORI-501 3' / 5'
175729 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
6 CH501-184J6
Hschr19LRC_PGF1_ctg3_1
bPG184J6
EPN details
Submitted to EMBL
12-JAN-09
CU041368.1
finished
134840 CHORI-501 3' / 5'
134840 / 8138
- / -
8137
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
7 CH501-230H20
Hschr19LRC_PGF1_ctg3_1
bPG230H20
EPN details
Submitted to EMBL
12-JAN-09
CU151839.1
finished
196245 CHORI-501 3' / 5'
196245 / 95531
- / -
93847
1.98
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
8 CTC-550B14
Hschr19LRC_PGF1_ctg3_1
bK550B14
-
-
AC011476.8
finished
187064 CIT-HSP-C        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
7
Clone HTGS Phases
finished
7
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
173,708
Total finished length of fin clones w/ overlap
1,159,992
Total finished length of fin clones w/o overlap
986,284
Total overlap length of fin+unfin clones
173,708
Total finished length of fin+unfin clones w/ overlap
1,159,992
Total finished length of fin+unfin clones w/o overlap
986,284

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/lk6fez5s