ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_6__19 (TPF updated: 2014-10-29)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
Hschr19LRC_LRC_t_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
2
Hschr19LRC_LRC_t_ctg3_1
CONTAINED
KF511280
KF511280.1
finished
1 CTD-3093M3
Hschr19LRC_LRC_t_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
  GAP (type-2) length 510000 bps    
4 XX-FLRC_B001A4
Hschr19LRC_LRC_t_ctg3_1
Cl/Pr FLRC_B001A4/fLRC_B001A4 swap
EPN details
CU464054.2
finished
5 XX-FLRC_B001E5
Hschr19LRC_LRC_t_ctg3_1
Cl/Pr FLRC_B001E5/fLRC_B001E5 swap
EPN details
CU464061.5
finished
6 XX-FLRC_B001A5
Hschr19LRC_LRC_t_ctg3_1
Cl/Pr FLRC_B001A5/fLRC_B001A5 swap
EPN details
CU464055.3
finished
  GAP (type-2) length 26000 bps    
8 CTC-550B14
Hschr19LRC_LRC_t_ctg3_1
bK550B14
AC011476.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137190 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 1 137190 +
137191 137602 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 KF511280.1 1 412 +
137603 198018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 137602 198017 +
198019 708018 4 N 510000 contig yes # ALIGN GENUS
708019 743994 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU464054.2 1 35976 +
743995 779415 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU464061.5 9145 44565 +
779416 792005 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU464055.3 20763 33352 +
792006 818005 8 N 26000 contig yes # ALIGN GENUS
818006 1005069 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC011476.8 1 187064 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTD-3093M3
Hschr19LRC_LRC_t_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2 3' / 5'
137190 / 1
60416 / -
412
0.24
Identified
2014-10-29
fetch_ncbi...
humpub
 
2
Hschr19LRC_LRC_t_ctg3_1
CONTAINED
KF511280
-
-
KF511280.1
finished
412 - 3' / 5'
412 / 137602
- / 137190
412
0.24
Identified
2014-10-29
fetch_ncbi...
humpub
 
1 CTD-3093M3
Hschr19LRC_LRC_t_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2        
  GAP (type-2) length 510000 bps                  
4 XX-FLRC_B001A4
Hschr19LRC_LRC_t_ctg3_1
Cl/Pr FLRC_B001A4/fLRC_B001A4 swap
EPN details
Submitted to EMBL
12-JAN-09
CU464054.2
finished
35976 - 3' / 5'
35976 / 9145
- / -
9144
0
Identified
2014-10-29
fetch_ncbi...
humpub
 
5 XX-FLRC_B001E5
Hschr19LRC_LRC_t_ctg3_1
Cl/Pr FLRC_B001E5/fLRC_B001E5 swap
EPN details
Submitted to EMBL
12-JAN-09
CU464061.5
finished
44565 - 3' / 5'
44565 / 20763
- / -
20762
0
Identified
2014-10-29
fetch_ncbi...
humpub
 
6 XX-FLRC_B001A5
Hschr19LRC_LRC_t_ctg3_1
Cl/Pr FLRC_B001A5/fLRC_B001A5 swap
EPN details
Submitted to EMBL
12-JAN-09
CU464055.3
finished
33352 -        
  GAP (type-2) length 26000 bps                  
8 CTC-550B14
Hschr19LRC_LRC_t_ctg3_1
bK550B14
-
-
AC011476.8
finished
187064 CIT-HSP-C        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
30,317
Total finished length of fin clones w/ overlap
499,386
Total finished length of fin clones w/o overlap
469,069
Total overlap length of fin+unfin clones
30,317
Total finished length of fin+unfin clones w/ overlap
499,386
Total finished length of fin+unfin clones w/o overlap
469,069

Dovetails

# rank accession status length date
1 1 AC012314.8 unfinished 60,416 Thu, 30 Oct 2014 23:26

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