ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_6__6 (TPF updated: 2015-09-04)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH501-308K3
Hschr6_MHC_QBL_ctg1
bPG308K3
AL662890.3
finished
2 DAQB-239N17
Hschr6_MHC_QBL_ctg1
bQB239N17
AL844539.5
finished
3 DAQB-5M14
Hschr6_MHC_QBL_ctg1
bQB5M14
BX000360.7
finished
4 DAQB-73K12
Hschr6_MHC_QBL_ctg1
bQB73K12
BX537153.6
finished
5 DAQB-314F7
Hschr6_MHC_QBL_ctg1
bQB314F7
AL954865.13
finished
6 DAQB-117O11
Hschr6_MHC_QBL_ctg1
bQB117O11
AL929561.5
finished
7 DAQB-153A4
Hschr6_MHC_QBL_ctg1
bQB153A4
AL935156.4
finished
8 DAQB-169K4
Hschr6_MHC_QBL_ctg1
bQB169K4
AL929573.13
finished
  GAP (type-2) length 159310 bps    
10 DAQB-283L15
Hschr6_MHC_QBL_ctg1
bQB283L15
BX296534.5
finished
11 DAQB-304F3
Hschr6_MHC_QBL_ctg1
bQB304F3
BX004810.8
finished
12 DAQB-12N14
Hschr6_MHC_QBL_ctg1
bQB12N14
BX000531.11
finished
13 DAQB-36F16
Hschr6_MHC_QBL_ctg1
bQB36F16
BX000688.11
finished
14 DAQB-92E24
Hschr6_MHC_QBL_ctg1
bQB92E24
AL929591.8
finished
15 DAQB-335A13
Hschr6_MHC_QBL_ctg1
bQB335A13
AL844851.4
finished
16 DAQB-346J13
Hschr6_MHC_QBL_ctg1
bQB346J13
BX001005.6
finished
17 DAQB-90C11
Hschr6_MHC_QBL_ctg1
bQB90C11
AL845454.6
finished
18 DAQB-215D11
Hschr6_MHC_QBL_ctg1
bQB215D11
AL845439.5
finished
19 DAQB-112K1
Hschr6_MHC_QBL_ctg1
bQB112K1
BX322644.8
finished
20 DAQB-44E15
Hschr6_MHC_QBL_ctg1
bQB44E15
AL844220.3
finished
21 DAQB-256M13
Hschr6_MHC_QBL_ctg1
bQB256M13
AL845452.3
finished
22 DAQB-170I5
Hschr6_MHC_QBL_ctg1
bQB170I5
AL773535.8
finished
23 DAQB-39G10
Hschr6_MHC_QBL_ctg1
bQB39G10
AL844203.3
finished
24 DAQB-352F19
Hschr6_MHC_QBL_ctg1
bQB352F19
AL844213.2
finished
25 DAQB-256B5
Hschr6_MHC_QBL_ctg1
bQB256B5
BX000357.7
finished
26 DAQB-298I5
Hschr6_MHC_QBL_ctg1
bQB298I5
BX248507.3
finished
27 DAQB-47P19
Hschr6_MHC_QBL_ctg1
bQB47P19
AL845353.7
finished
28 DAQB-230F21
Hschr6_MHC_QBL_ctg1
bQB230F21
AL773551.4
finished
29 DAQB-10J12
Hschr6_MHC_QBL_ctg1
bQB10J12
AL805917.3
finished
30 DAQB-196C18
Hschr6_MHC_QBL_ctg1
bQB196C18
AL773589.3
finished
31 DAQB-11J22
Hschr6_MHC_QBL_ctg1
bQB11J22
AL773541.6
finished
32 DAQB-218D23
Hschr6_MHC_QBL_ctg1
bQB218D23
AL805909.5
finished
33 DAQB-185I1
Hschr6_MHC_QBL_ctg1
bQB185I1
AL773544.5
finished
34 DAQB-5G13
Hschr6_MHC_QBL_ctg1
bQB5G13
AL845458.9
finished
35 DAQB-115I13
Hschr6_MHC_QBL_ctg1
bQB115I13
BX322539.9
finished
36 DAQB-48K1
Hschr6_MHC_QBL_ctg1
bQB48K1
AL845443.3
finished
  GAP (type-2) length 51150 bps    
38 DAQB-72H16
Hschr6_MHC_QBL_ctg1
bQB72H16
BX001040.14
finished
39 DAQB-87N14
Hschr6_MHC_QBL_ctg1
bQB87N14
AL929587.5
finished
40 DAQB-195H10
Hschr6_MHC_QBL_ctg1
bQB195H10
AL805934.3
finished
41 DAQB-350E15
Hschr6_MHC_QBL_ctg1
bQB350E15
AL844216.3
finished
  GAP (type-2) length 26431 bps    
43 DAQB-147D11
Hschr6_MHC_QBL_ctg1
bQB147D11
AL929592.8
finished
44 DAQB-331I12
Hschr6_MHC_QBL_ctg1
bQB331I12
AL844853.23
finished
45 DAQB-124C11
Hschr6_MHC_QBL_ctg1
bQB124C11
AL929593.6
finished
  GAP (type-2) length 52793 bps    
47 DAQB-143M3
Hschr6_MHC_QBL_ctg1
bQB143M3
AL845464.5
finished
48 DAQB-282H15
Hschr6_MHC_QBL_ctg1
bQB282H15
AL845509.6
finished
49 DAQB-309N16
Hschr6_MHC_QBL_ctg1
bQB309N16
BX001039.5
finished
50 DAQB-184K4
Hschr6_MHC_QBL_ctg1
bQB184K4
AL935032.13
finished
51 DAQB-97F8
Hschr6_MHC_QBL_ctg1
bQB97F8
AL929581.5
finished
52 BQB97F8_109B10_3
Hschr6_MHC_QBL_ctg1
BQB97F8_109B10_3
CR854861.1
finished
53 BQB97F8_109B10_2
Hschr6_MHC_QBL_ctg1
BQB97F8_109B10_2
CR854860.1
finished
54 BQB97F8_109B10_1
Hschr6_MHC_QBL_ctg1
BQB97F8_109B10_1
CR854859.1
finished
55 DAQB-109B10
Hschr6_MHC_QBL_ctg1
bQB109B10
AL935026.4
finished
56 DAQB-187P15
Hschr6_MHC_QBL_ctg1
bQB187P15
AL773543.3
finished
  GAP (type-2) length 26975 bps    
58 DAQB-69D7
Hschr6_MHC_QBL_ctg1
bQB69D7
AL935043.4
finished
59 DAQB-96B10
Hschr6_MHC_QBL_ctg1
bQB96B10
AL935042.6
finished
60 DAQB-22D21
Hschr6_MHC_QBL_ctg1
bQB22D21
AL805913.4
finished
61 DAQB-79P13
Hschr6_MHC_QBL_ctg1
bQB79P13
AL845446.7
finished
62 DAQB-314F24
Hschr6_MHC_QBL_ctg1
bQB314F24
AL844527.6
finished
63 DAQB-193B15
Hschr6_MHC_QBL_ctg1
bQB193B15
BX000343.5
finished
64 DAQB-126H3
Hschr6_MHC_QBL_ctg1
bQB126H3
BX248088.18
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 46042 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL662890.3 1 46042 +
46043 144187 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL844539.5 1 98145 +
144188 186588 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 BX000360.7 2001 44401 +
186589 197121 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 BX537153.6 2001 12533 +
197122 236247 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL954865.13 2002 41127 +
236248 415358 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL929561.5 2001 181111 +
415359 508718 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL935156.4 2001 95360 +
508719 521889 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL929573.13 2001 15171 +
521890 681199 9 N 159310 contig yes # ALIGN GENUS
681200 687692 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 BX296534.5 1 6493 +
687693 718265 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 BX004810.8 2001 32573 +
718266 805404 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 BX000531.11 2001 89139 +
805405 906088 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 BX000688.11 2001 102684 +
906089 965331 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL929591.8 2001 61243 +
965332 1082361 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL844851.4 2001 119030 +
1082362 1130535 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 BX001005.6 2001 50174 +
1130536 1287962 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL845454.6 2001 159427 +
1287963 1360726 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL845439.5 2001 74764 +
1360727 1411654 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 BX322644.8 2001 52928 +
1411655 1561952 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL844220.3 2001 152298 +
1561953 1567522 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL845452.3 2001 7570 +
1567523 1653596 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL773535.8 2001 88074 +
1653597 1701521 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL844203.3 2001 49925 +
1701522 1797151 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL844213.2 2001 97630 +
1797152 1859323 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 BX000357.7 2001 64172 +
1859324 1879465 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 BX248507.3 2001 22142 +
1879466 2008220 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL845353.7 2001 130755 +
2008221 2082445 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL773551.4 2001 76225 +
2082446 2145818 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL805917.3 2001 65373 +
2145819 2158195 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL773589.3 2792 15168 +
2158196 2259975 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL773541.6 2001 103780 +
2259976 2343776 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL805909.5 2001 85801 +
2343777 2455164 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL773544.5 2001 113388 +
2455165 2467332 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL845458.9 2001 14168 +
2467333 2534827 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 BX322539.9 2001 69495 +
2534828 2680903 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 36 AL845443.3 2001 148076 +
2680904 2732053 37 N 51150 contig yes # ALIGN GENUS
2732054 2815573 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 BX001040.14 1 83520 +
2815574 2874931 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 AL929587.5 2001 61358 +
2874932 2972040 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 AL805934.3 2001 99109 +
2972041 3023165 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 AL844216.3 2001 53125 +
3023166 3049596 42 N 26431 contig yes # ALIGN GENUS
3049597 3109432 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 AL929592.8 1 59836 +
3109433 3260896 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 AL844853.23 2001 153464 +
3260897 3316235 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 AL929593.6 2001 57339 +
3316236 3369028 46 N 52793 contig yes # ALIGN GENUS
3369029 3425775 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 AL845464.5 1 56747 +
3425776 3550179 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 AL845509.6 2001 126404 +
3550180 3606607 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 BX001039.5 2001 58428 +
3606608 3699870 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 AL935032.13 2001 95263 +
3699871 3816641 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 AL929581.5 2001 118771 +
3816642 3824937 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 CR854861.1 101 8396 +
3824938 3831769 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 CR854860.1 101 6932 +
3831770 3838638 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 CR854859.1 101 6969 +
3838639 3877717 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 AL935026.4 101 39179 +
3877718 3993020 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 56 AL773543.3 2001 117303 +
3993021 4019995 57 N 26975 contig yes # ALIGN GENUS
4019996 4083174 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 64 AL935043.4 1 63179 +
4083175 4176962 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 64 AL935042.6 2001 95788 +
4176963 4281690 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 64 AL805913.4 2001 106728 +
4281691 4373532 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 64 AL845446.7 2001 93842 +
4373533 4481055 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 64 AL844527.6 2001 109523 +
4481056 4499398 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 64 BX000343.5 2001 20343 +
4499399 4611973 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 64 BX248088.18 2001 114575 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
5
Gap types
type-2
5
Total clones
59
Clone HTGS Phases
finished
59
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
188,425
Total finished length of fin clones w/ overlap
4,483,752
Total finished length of fin clones w/o overlap
4,295,327
Total overlap length of fin+unfin clones
188,425
Total finished length of fin+unfin clones w/ overlap
4,483,752
Total finished length of fin+unfin clones w/o overlap
4,295,327

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Other links

* quick link - http://q.sanger.ac.uk/wokthb2c