ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_5__19 (TPF updated: 2014-09-02)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
Hschr19LRC_LRC_s_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
2
Hschr19LRC_LRC_s_ctg3_1
CONTAINED
KF511280
KF511280.1
finished
1 CTD-3093M3
Hschr19LRC_LRC_s_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
  GAP (type-2) length 624000 bps    
4 XX-FLRC_B001F5
Hschr19LRC_LRC_s_ctg3_1
Cl/Pr FLRC_B001F5/fLRC_B001F5 swap
EPN details
CU464063.6
finished
  GAP (type-2) length 24000 bps    
6 CTC-550B14
Hschr19LRC_LRC_s_ctg3_1
bK550B14
AC011476.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137190 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 1 137190 +
137191 137602 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 KF511280.1 1 412 +
137603 198018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 137602 198017 +
198019 822018 4 N 624000 contig yes # ALIGN GENUS
822019 857712 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CU464063.6 1 35694 +
857713 881712 6 N 24000 contig yes # ALIGN GENUS
881713 1068776 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC011476.8 1 187064 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTD-3093M3
Hschr19LRC_LRC_s_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2 3' / 5'
137190 / 1
60416 / -
412
0.24
Identified
2014-09-02
fetch_ncbi...
humpub
 
2
Hschr19LRC_LRC_s_ctg3_1
CONTAINED
KF511280
-
-
KF511280.1
finished
412 - 3' / 5'
412 / 137602
- / 137190
412
0.24
Identified
2014-09-02
fetch_ncbi...
humpub
 
1 CTD-3093M3
Hschr19LRC_LRC_s_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2        
  GAP (type-2) length 624000 bps                  
4 XX-FLRC_B001F5
Hschr19LRC_LRC_s_ctg3_1
Cl/Pr FLRC_B001F5/fLRC_B001F5 swap
EPN details
Analysed
26-JAN-11
CU464063.6
finished
35694 -        
  GAP (type-2) length 24000 bps                  
6 CTC-550B14
Hschr19LRC_LRC_s_ctg3_1
bK550B14
-
-
AC011476.8
finished
187064 CIT-HSP-C        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
411
Total finished length of fin clones w/ overlap
421,187
Total finished length of fin clones w/o overlap
420,776
Total overlap length of fin+unfin clones
411
Total finished length of fin+unfin clones w/ overlap
421,187
Total finished length of fin+unfin clones w/o overlap
420,776

Dovetails

# rank accession status length date
1 1 AC012314.8 unfinished 60,416 Mon, 01 Sep 2014 23:44

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* quick link - http://q.sanger.ac.uk/w5rd8lm9