ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_5__6 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH501-308K3
Hschr6_MHC_MCF_ctg1
 bPG308K3
 AL662890.3
finished
2 DAMC-338N21
Hschr6_MHC_MCF_ctg1
 bMC338N21
 CR936879.6
finished
  GAP (type-2) length 2902 bps    
4 DAMC-279M23
Hschr6_MHC_MCF_ctg1
 bMC279M23
 CR936876.2
finished
  GAP (type-2) length 7328 bps    
6 DAMC-4K22
Hschr6_MHC_MCF_ctg1
 bMC4K22
 CR936883.15
finished
  GAP (type-2) length 53599 bps    
8 DAMC-324C19
Hschr6_MHC_MCF_ctg1
 bMC324C19
 CR936923.5
finished
9 DAMC-365H22
Hschr6_MHC_MCF_ctg1
 bMC365H22
 CR933783.5
finished
  GAP (type-2) length 20427 bps    
11 DAMC-220I8
Hschr6_MHC_MCF_ctg1
 bMC220I8
 CR759834.8
finished
  GAP (type-2) length 68831 bps    
13 DAMC-22P6
Hschr6_MHC_MCF_ctg1
 bMC22P6
 CR933842.5
finished
14 DAMC-143C14
Hschr6_MHC_MCF_ctg1
 bMC143C14
 CR759808.2
finished
  GAP (type-2) length 8989 bps    
16 DAMC-143I21
Hschr6_MHC_MCF_ctg1
 bMC143I21
 CR759768.2
finished
17 DAMC-346D16
Hschr6_MHC_MCF_ctg1
 bMC346D16
 CR942274.1
finished
18 DAMC-177C8
Hschr6_MHC_MCF_ctg1
 bMC177C8
 CR759766.5
finished
19 DAMC-335E20
Hschr6_MHC_MCF_ctg1
 bMC335E20
 CR759790.7
finished
  GAP (type-2) length 15046 bps    
21 DAMC-149H2
Hschr6_MHC_MCF_ctg1
 bMC149H2
 CR788234.4
finished
22 DAMC-101F5
Hschr6_MHC_MCF_ctg1
 bMC101F5
 CT009517.12
finished
  GAP (type-2) length 114461 bps    
24 DAMC-190N15
Hschr6_MHC_MCF_ctg1
 bMC190N15
 CR759762.5
finished
25 DAMC-182C13
Hschr6_MHC_MCF_ctg1
 bMC182C13
 CR759763.2
finished
26 DAMC-153M24
Hschr6_MHC_MCF_ctg1
 bMC153M24
 CR759801.4
finished
27 DAMC-72C9
Hschr6_MHC_MCF_ctg1
 bMC72C9
 CR759838.4
finished
  GAP (type-2) length 163747 bps    
29 DAMC-170D7
Hschr6_MHC_MCF_ctg1
 bMC170D7
 CR759832.3
finished
  GAP (type-2) length 22337 bps    
31 DAMC-259M15
Hschr6_MHC_MCF_ctg1
 bMC259M15
 CR936916.2
finished
32 DAMC-32J6
Hschr6_MHC_MCF_ctg1
 bMC32J6
 CR936927.1
finished
33 DAMC-346K1
Hschr6_MHC_MCF_ctg1
 bMC346K1
 CR847863.2
finished
34 DAMC-83F13
Hschr6_MHC_MCF_ctg1
 bMC83F13
 CR759778.8
finished
35 XX-BMC83F13_BMC316D20
Hschr6_MHC_MCF_ctg1
 BMC83F13_BMC316D20
 CU013522.1
finished
36 DAMC-316D20
Hschr6_MHC_MCF_ctg1
 bMC316D20
 CR788240.3
finished
  GAP (type-2) length 97959 bps    
38 DAMC-325F20
Hschr6_MHC_MCF_ctg1
 bMC325F20
 CR942271.10
finished
  GAP (type-2) length 10174 bps    
40 DAMC-336H8
Hschr6_MHC_MCF_ctg1
 bMC336H8
 CR936875.3
finished
  GAP (type-2) length 4797 bps    
42 DAMC-192G6
Hschr6_MHC_MCF_ctg1
 bMC192G6
 CR759772.4
finished
43 DAMC-11N4
Hschr6_MHC_MCF_ctg1
 bMC11N4
 CR759805.5
finished
44 DAMC-257B19
Hschr6_MHC_MCF_ctg1
 bMC257B19
 CR936880.3
finished
45 DAMC-338G21
Hschr6_MHC_MCF_ctg1
 bMC338G21
 CR938714.3
finished
46 DAMC-88G10
Hschr6_MHC_MCF_ctg1
 bMC88G10
 CR759815.3
finished
47 DAMC-118J7
Hschr6_MHC_MCF_ctg1
 bMC118J7
 CR933862.6
finished
48 DAMC-153L10
Hschr6_MHC_MCF_ctg1
 bMC153L10
 CR759828.5
finished
  GAP (type-2) length 99452 bps    
50 DAMC-190B12
Hschr6_MHC_MCF_ctg1
 bMC190B12
 CR753864.4
finished
51 DAMC-81L12
Hschr6_MHC_MCF_ctg1
 bMC81L12
 CR942185.8
finished
  GAP (type-2) length 11423 bps    
53 DAMC-157M7
Hschr6_MHC_MCF_ctg1
 bMC157M7
 CR759761.9
finished
54 DAMC-117B11
Hschr6_MHC_MCF_ctg1
 bMC117B11
 CR759787.4
finished
  GAP (type-2) length 34221 bps    
56 DAMC-303C24
Hschr6_MHC_MCF_ctg1
 bMC303C24
 CR759784.6
finished
57 DAMC-178C20
Hschr6_MHC_MCF_ctg1
 bMC178C20
 CR759782.7
finished
  GAP (type-2) length 25852 bps    
59 DAMC-258G8
Hschr6_MHC_MCF_ctg1
 bMC258G8
 CR936924.2
finished
60 DAMC-407K20
Hschr6_MHC_MCF_ctg1
 bMC407K20
 CR936882.4
finished
61 DAMC-284F20
Hschr6_MHC_MCF_ctg1
 bMC284F20
 CR759792.3
finished
62 DAMC-327B5
Hschr6_MHC_MCF_ctg1
 bMC327B5
 CR925796.6
finished
63 DAMC-108L3
Hschr6_MHC_MCF_ctg1
 bMC108L3
 CR933878.7
finished
64 DAMC-278C20
Hschr6_MHC_MCF_ctg1
 bMC278C20
 CR938720.8
finished
  GAP (type-2) length 56338 bps    
66 DAMC-185H11
Hschr6_MHC_MCF_ctg1
 bMC185H11
 CR759773.4
finished
67 DAMC-16P5
Hschr6_MHC_MCF_ctg1
 bMC16P5
 CR759779.6
finished
68 DAMC-146E17
Hschr6_MHC_MCF_ctg1
 bMC146E17
 CR788250.6
finished
  GAP (type-2) length 30555 bps    
70 DAMC-134I7
Hschr6_MHC_MCF_ctg1
 bMC134I7
 CR933859.5
finished
71 DAMC-176M21
Hschr6_MHC_MCF_ctg1
 bMC176M21
 CR759848.2
finished
72 DAMC-27I8
Hschr6_MHC_MCF_ctg1
 bMC27I8
 CT009502.2
finished
  GAP (type-2) length 47 bps    
74 DAMC-219D2
Hschr6_MHC_MCF_ctg1
 bMC219D2
 CR933844.2
finished
75 DAMC-226H3
Hschr6_MHC_MCF_ctg1
 bMC226H3
 CR759798.3
finished
  GAP (type-2) length 17921 bps    
77 DAMC-206D4
Hschr6_MHC_MCF_ctg1
 bMC206D4
 CR759795.4
finished
  GAP (type-2) length 172081 bps    
79 DAMC-269O2
Hschr6_MHC_MCF_ctg1
 bMC269O2
 CR936877.4
finished
80 DAMC-227D19
Hschr6_MHC_MCF_ctg1
 bMC227D19
 CR759786.5
finished
81 DAMC-283P18
Hschr6_MHC_MCF_ctg1
 bMC283P18
 CR759793.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 90662 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL662890.3 1 90662 +
90663 135141 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR936879.6 1 44479 +
135142 138043 3 N 2902 contig yes # ALIGN GENUS
138044 179429 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 CR936876.2 1 41386 +
179430 186757 5 N 7328 contig yes # ALIGN GENUS
186758 229133 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 CR936883.15 1 42376 +
229134 282732 7 N 53599 contig yes # ALIGN GENUS
282733 333963 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 CR936923.5 1 51231 +
333964 383988 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 CR933783.5 2001 52025 +
383989 404415 10 N 20427 contig yes # ALIGN GENUS
404416 491590 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 CR759834.8 1 87175 +
491591 560421 12 N 68831 contig yes # ALIGN GENUS
560422 573635 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 CR933842.5 1 13214 +
573636 676599 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 CR759808.2 2001 104964 +
676600 685588 15 N 8989 contig yes # ALIGN GENUS
685589 809340 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 19 CR759768.2 1 123752 +
809341 826968 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 19 CR942274.1 2001 19628 +
826969 952248 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 19 CR759766.5 2001 127280 +
952249 994250 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 19 CR759790.7 2001 44002 +
994251 1009296 20 N 15046 contig yes # ALIGN GENUS
1009297 1096150 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 22 CR788234.4 1 86854 +
1096151 1177759 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 22 CT009517.12 1001 82609 +
1177760 1292220 23 N 114461 contig yes # ALIGN GENUS
1292221 1332292 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 27 CR759762.5 1 40072 +
1332293 1440795 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 27 CR759763.2 2001 110503 +
1440796 1460028 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 27 CR759801.4 2001 21233 +
1460029 1562952 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 27 CR759838.4 2001 104924 +
1562953 1726699 28 N 163747 contig yes # ALIGN GENUS
1726700 1815769 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CR759832.3 1 89070 +
1815770 1838106 30 N 22337 contig yes # ALIGN GENUS
1838107 1864078 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 36 CR936916.2 1 25972 +
1864079 1906861 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 36 CR936927.1 2001 44783 +
1906862 1926905 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 36 CR847863.2 2001 22044 +
1926906 2013720 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 36 CR759778.8 2001 88815 +
2013721 2016174 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 36 CU013522.1 876 3329 +
2016175 2091199 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 36 CR788240.3 50 75074 +
2091200 2189158 37 N 97959 contig yes # ALIGN GENUS
2189159 2241824 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 38 CR942271.10 1 52666 +
2241825 2251998 39 N 10174 contig yes # ALIGN GENUS
2251999 2300850 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 CR936875.3 1 48852 +
2300851 2305647 41 N 4797 contig yes # ALIGN GENUS
2305648 2416797 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 48 CR759772.4 1 111150 +
2416798 2471606 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 48 CR759805.5 2001 56809 +
2471607 2476416 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 48 CR936880.3 2001 6810 +
2476417 2485079 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 48 CR938714.3 1940 10602 +
2485080 2585861 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 48 CR759815.3 2001 102782 +
2585862 2611630 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 48 CR933862.6 2001 27769 +
2611631 2712451 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 48 CR759828.5 2001 102821 +
2712452 2811903 49 N 99452 contig yes # ALIGN GENUS
2811904 2894095 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 51 CR753864.4 1 82192 +
2894096 2947576 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 51 CR942185.8 2001 55481 +
2947577 2958999 52 N 11423 contig yes # ALIGN GENUS
2959000 3042848 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 54 CR759761.9 1 83849 +
3042849 3154498 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 54 CR759787.4 2001 113650 +
3154499 3188719 55 N 34221 contig yes # ALIGN GENUS
3188720 3251847 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 57 CR759784.6 1 63128 +
3251848 3329672 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 57 CR759782.7 2001 79825 +
3329673 3355524 58 N 25852 contig yes # ALIGN GENUS
3355525 3397655 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR936924.2 1 42131 +
3397656 3401239 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR936882.4 2001 5584 +
3401240 3444401 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR759792.3 2001 45162 +
3444402 3479705 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR925796.6 2001 37304 +
3479706 3580612 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR933878.7 2001 102907 +
3580613 3602941 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR938720.8 2001 24329 +
3602942 3659279 65 N 56338 contig yes # ALIGN GENUS
3659280 3776501 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 CR759773.4 1 117222 +
3776502 3813091 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 CR759779.6 2001 38590 +
3813092 3899294 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 68 CR788250.6 2001 88203 +
3899295 3929849 69 N 30555 contig yes # ALIGN GENUS
3929850 4013531 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CR933859.5 1 83682 +
4013532 4116412 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CR759848.2 2001 104881 +
4116413 4149579 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CT009502.2 2001 35167 +
4149580 4149626 73 N 47 contig yes # ALIGN GENUS
4149627 4167945 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 75 CR933844.2 1 18319 +
4167946 4284353 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 75 CR759798.3 2001 118408 +
4284354 4302274 76 N 17921 contig yes # ALIGN GENUS
4302275 4422172 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 CR759795.4 1 119898 +
4422173 4594253 78 N 172081 contig yes # ALIGN GENUS
4594254 4644815 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 CR936877.4 1 50562 +
4644816 4766214 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 CR759786.5 2001 123399 +
4766215 4833398 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 CR759793.3 2001 69184 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
22
Gap types
type-2
22
Total clones
59
Clone HTGS Phases
finished
59
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
110,326
Total finished length of fin clones w/ overlap
3,907,400
Total finished length of fin clones w/o overlap
3,797,074
Total overlap length of fin+unfin clones
110,326
Total finished length of fin+unfin clones w/ overlap
3,907,400
Total finished length of fin+unfin clones w/o overlap
3,797,074

Dovetails

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# rank accession status length date
1 1 AL662890 unfinished 2,148 Tue, 16 Jan 2018 00:11

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