ChromoView - clone / Assembly sequencing status
Human: Sub region GRC__HUMAN__ALT_REF_LOCI_5__6 (TPF updated: 2018-01-16) TPF
#
Clone ext/Contig
Clone int
Acc/Fin
1
CH501-308K3
Hschr6_MHC_MCF_ctg1
bPG308K3
AL662890.3
finished
2
DAMC-338N21
Hschr6_MHC_MCF_ctg1
bMC338N21
CR936879.6
finished
GAP (type-2) length 2902 bps
4
DAMC-279M23
Hschr6_MHC_MCF_ctg1
bMC279M23
CR936876.2
finished
GAP (type-2) length 7328 bps
6
DAMC-4K22
Hschr6_MHC_MCF_ctg1
bMC4K22
CR936883.15
finished
GAP (type-2) length 53599 bps
8
DAMC-324C19
Hschr6_MHC_MCF_ctg1
bMC324C19
CR936923.5
finished
9
DAMC-365H22
Hschr6_MHC_MCF_ctg1
bMC365H22
CR933783.5
finished
GAP (type-2) length 20427 bps
11
DAMC-220I8
Hschr6_MHC_MCF_ctg1
bMC220I8
CR759834.8
finished
GAP (type-2) length 68831 bps
13
DAMC-22P6
Hschr6_MHC_MCF_ctg1
bMC22P6
CR933842.5
finished
14
DAMC-143C14
Hschr6_MHC_MCF_ctg1
bMC143C14
CR759808.2
finished
GAP (type-2) length 8989 bps
16
DAMC-143I21
Hschr6_MHC_MCF_ctg1
bMC143I21
CR759768.2
finished
17
DAMC-346D16
Hschr6_MHC_MCF_ctg1
bMC346D16
CR942274.1
finished
18
DAMC-177C8
Hschr6_MHC_MCF_ctg1
bMC177C8
CR759766.5
finished
19
DAMC-335E20
Hschr6_MHC_MCF_ctg1
bMC335E20
CR759790.7
finished
GAP (type-2) length 15046 bps
21
DAMC-149H2
Hschr6_MHC_MCF_ctg1
bMC149H2
CR788234.4
finished
22
DAMC-101F5
Hschr6_MHC_MCF_ctg1
bMC101F5
CT009517.12
finished
GAP (type-2) length 114461 bps
24
DAMC-190N15
Hschr6_MHC_MCF_ctg1
bMC190N15
CR759762.5
finished
25
DAMC-182C13
Hschr6_MHC_MCF_ctg1
bMC182C13
CR759763.2
finished
26
DAMC-153M24
Hschr6_MHC_MCF_ctg1
bMC153M24
CR759801.4
finished
27
DAMC-72C9
Hschr6_MHC_MCF_ctg1
bMC72C9
CR759838.4
finished
GAP (type-2) length 163747 bps
29
DAMC-170D7
Hschr6_MHC_MCF_ctg1
bMC170D7
CR759832.3
finished
GAP (type-2) length 22337 bps
31
DAMC-259M15
Hschr6_MHC_MCF_ctg1
bMC259M15
CR936916.2
finished
32
DAMC-32J6
Hschr6_MHC_MCF_ctg1
bMC32J6
CR936927.1
finished
33
DAMC-346K1
Hschr6_MHC_MCF_ctg1
bMC346K1
CR847863.2
finished
34
DAMC-83F13
Hschr6_MHC_MCF_ctg1
bMC83F13
CR759778.8
finished
35
XX-BMC83F13_BMC316D20
Hschr6_MHC_MCF_ctg1
BMC83F13_BMC316D20
CU013522.1
finished
36
DAMC-316D20
Hschr6_MHC_MCF_ctg1
bMC316D20
CR788240.3
finished
GAP (type-2) length 97959 bps
38
DAMC-325F20
Hschr6_MHC_MCF_ctg1
bMC325F20
CR942271.10
finished
GAP (type-2) length 10174 bps
40
DAMC-336H8
Hschr6_MHC_MCF_ctg1
bMC336H8
CR936875.3
finished
GAP (type-2) length 4797 bps
42
DAMC-192G6
Hschr6_MHC_MCF_ctg1
bMC192G6
CR759772.4
finished
43
DAMC-11N4
Hschr6_MHC_MCF_ctg1
bMC11N4
CR759805.5
finished
44
DAMC-257B19
Hschr6_MHC_MCF_ctg1
bMC257B19
CR936880.3
finished
45
DAMC-338G21
Hschr6_MHC_MCF_ctg1
bMC338G21
CR938714.3
finished
46
DAMC-88G10
Hschr6_MHC_MCF_ctg1
bMC88G10
CR759815.3
finished
47
DAMC-118J7
Hschr6_MHC_MCF_ctg1
bMC118J7
CR933862.6
finished
48
DAMC-153L10
Hschr6_MHC_MCF_ctg1
bMC153L10
CR759828.5
finished
GAP (type-2) length 99452 bps
50
DAMC-190B12
Hschr6_MHC_MCF_ctg1
bMC190B12
CR753864.4
finished
51
DAMC-81L12
Hschr6_MHC_MCF_ctg1
bMC81L12
CR942185.8
finished
GAP (type-2) length 11423 bps
53
DAMC-157M7
Hschr6_MHC_MCF_ctg1
bMC157M7
CR759761.9
finished
54
DAMC-117B11
Hschr6_MHC_MCF_ctg1
bMC117B11
CR759787.4
finished
GAP (type-2) length 34221 bps
56
DAMC-303C24
Hschr6_MHC_MCF_ctg1
bMC303C24
CR759784.6
finished
57
DAMC-178C20
Hschr6_MHC_MCF_ctg1
bMC178C20
CR759782.7
finished
GAP (type-2) length 25852 bps
59
DAMC-258G8
Hschr6_MHC_MCF_ctg1
bMC258G8
CR936924.2
finished
60
DAMC-407K20
Hschr6_MHC_MCF_ctg1
bMC407K20
CR936882.4
finished
61
DAMC-284F20
Hschr6_MHC_MCF_ctg1
bMC284F20
CR759792.3
finished
62
DAMC-327B5
Hschr6_MHC_MCF_ctg1
bMC327B5
CR925796.6
finished
63
DAMC-108L3
Hschr6_MHC_MCF_ctg1
bMC108L3
CR933878.7
finished
64
DAMC-278C20
Hschr6_MHC_MCF_ctg1
bMC278C20
CR938720.8
finished
GAP (type-2) length 56338 bps
66
DAMC-185H11
Hschr6_MHC_MCF_ctg1
bMC185H11
CR759773.4
finished
67
DAMC-16P5
Hschr6_MHC_MCF_ctg1
bMC16P5
CR759779.6
finished
68
DAMC-146E17
Hschr6_MHC_MCF_ctg1
bMC146E17
CR788250.6
finished
GAP (type-2) length 30555 bps
70
DAMC-134I7
Hschr6_MHC_MCF_ctg1
bMC134I7
CR933859.5
finished
71
DAMC-176M21
Hschr6_MHC_MCF_ctg1
bMC176M21
CR759848.2
finished
72
DAMC-27I8
Hschr6_MHC_MCF_ctg1
bMC27I8
CT009502.2
finished
GAP (type-2) length 47 bps
74
DAMC-219D2
Hschr6_MHC_MCF_ctg1
bMC219D2
CR933844.2
finished
75
DAMC-226H3
Hschr6_MHC_MCF_ctg1
bMC226H3
CR759798.3
finished
GAP (type-2) length 17921 bps
77
DAMC-206D4
Hschr6_MHC_MCF_ctg1
bMC206D4
CR759795.4
finished
GAP (type-2) length 172081 bps
79
DAMC-269O2
Hschr6_MHC_MCF_ctg1
bMC269O2
CR936877.4
finished
80
DAMC-227D19
Hschr6_MHC_MCF_ctg1
bMC227D19
CR759786.5
finished
81
DAMC-283P18
Hschr6_MHC_MCF_ctg1
bMC283P18
CR759793.3
finished
AGP
Details
Component Sanger::HumPub::ChromoView failed to execute
Statistics
Clone Summary
- Number of gaps
- 22
- Gap types
- type-2
- 22
- Total clones
- 59
- Clone HTGS Phases
- finished
- 59
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 110,326
- Total finished length of fin clones w/ overlap
- 3,907,400
- Total finished length of fin clones w/o overlap
- 3,797,074
- Total overlap length of fin+unfin clones
- 110,326
- Total finished length of fin+unfin clones w/ overlap
- 3,907,400
- Total finished length of fin+unfin clones w/o overlap
- 3,797,074
Dovetails
#
rank
accession
status
length
date
1
1
AL662890
unfinished
2,148
Tue, 16 Jan 2018 00:11
TPF
# | Clone ext/Contig | Clone int | Acc/Fin |
---|---|---|---|
1 | CH501-308K3 Hschr6_MHC_MCF_ctg1 |
bPG308K3 |
AL662890.3 finished |
2 | DAMC-338N21 Hschr6_MHC_MCF_ctg1 |
bMC338N21 |
CR936879.6 finished |
GAP (type-2) length 2902 bps | |||
4 | DAMC-279M23 Hschr6_MHC_MCF_ctg1 |
bMC279M23 |
CR936876.2 finished |
GAP (type-2) length 7328 bps | |||
6 | DAMC-4K22 Hschr6_MHC_MCF_ctg1 |
bMC4K22 |
CR936883.15 finished |
GAP (type-2) length 53599 bps | |||
8 | DAMC-324C19 Hschr6_MHC_MCF_ctg1 |
bMC324C19 |
CR936923.5 finished |
9 | DAMC-365H22 Hschr6_MHC_MCF_ctg1 |
bMC365H22 |
CR933783.5 finished |
GAP (type-2) length 20427 bps | |||
11 | DAMC-220I8 Hschr6_MHC_MCF_ctg1 |
bMC220I8 |
CR759834.8 finished |
GAP (type-2) length 68831 bps | |||
13 | DAMC-22P6 Hschr6_MHC_MCF_ctg1 |
bMC22P6 |
CR933842.5 finished |
14 | DAMC-143C14 Hschr6_MHC_MCF_ctg1 |
bMC143C14 |
CR759808.2 finished |
GAP (type-2) length 8989 bps | |||
16 | DAMC-143I21 Hschr6_MHC_MCF_ctg1 |
bMC143I21 |
CR759768.2 finished |
17 | DAMC-346D16 Hschr6_MHC_MCF_ctg1 |
bMC346D16 |
CR942274.1 finished |
18 | DAMC-177C8 Hschr6_MHC_MCF_ctg1 |
bMC177C8 |
CR759766.5 finished |
19 | DAMC-335E20 Hschr6_MHC_MCF_ctg1 |
bMC335E20 |
CR759790.7 finished |
GAP (type-2) length 15046 bps | |||
21 | DAMC-149H2 Hschr6_MHC_MCF_ctg1 |
bMC149H2 |
CR788234.4 finished |
22 | DAMC-101F5 Hschr6_MHC_MCF_ctg1 |
bMC101F5 |
CT009517.12 finished |
GAP (type-2) length 114461 bps | |||
24 | DAMC-190N15 Hschr6_MHC_MCF_ctg1 |
bMC190N15 |
CR759762.5 finished |
25 | DAMC-182C13 Hschr6_MHC_MCF_ctg1 |
bMC182C13 |
CR759763.2 finished |
26 | DAMC-153M24 Hschr6_MHC_MCF_ctg1 |
bMC153M24 |
CR759801.4 finished |
27 | DAMC-72C9 Hschr6_MHC_MCF_ctg1 |
bMC72C9 |
CR759838.4 finished |
GAP (type-2) length 163747 bps | |||
29 | DAMC-170D7 Hschr6_MHC_MCF_ctg1 |
bMC170D7 |
CR759832.3 finished |
GAP (type-2) length 22337 bps | |||
31 | DAMC-259M15 Hschr6_MHC_MCF_ctg1 |
bMC259M15 |
CR936916.2 finished |
32 | DAMC-32J6 Hschr6_MHC_MCF_ctg1 |
bMC32J6 |
CR936927.1 finished |
33 | DAMC-346K1 Hschr6_MHC_MCF_ctg1 |
bMC346K1 |
CR847863.2 finished |
34 | DAMC-83F13 Hschr6_MHC_MCF_ctg1 |
bMC83F13 |
CR759778.8 finished |
35 | XX-BMC83F13_BMC316D20 Hschr6_MHC_MCF_ctg1 |
BMC83F13_BMC316D20 |
CU013522.1 finished |
36 | DAMC-316D20 Hschr6_MHC_MCF_ctg1 |
bMC316D20 |
CR788240.3 finished |
GAP (type-2) length 97959 bps | |||
38 | DAMC-325F20 Hschr6_MHC_MCF_ctg1 |
bMC325F20 |
CR942271.10 finished |
GAP (type-2) length 10174 bps | |||
40 | DAMC-336H8 Hschr6_MHC_MCF_ctg1 |
bMC336H8 |
CR936875.3 finished |
GAP (type-2) length 4797 bps | |||
42 | DAMC-192G6 Hschr6_MHC_MCF_ctg1 |
bMC192G6 |
CR759772.4 finished |
43 | DAMC-11N4 Hschr6_MHC_MCF_ctg1 |
bMC11N4 |
CR759805.5 finished |
44 | DAMC-257B19 Hschr6_MHC_MCF_ctg1 |
bMC257B19 |
CR936880.3 finished |
45 | DAMC-338G21 Hschr6_MHC_MCF_ctg1 |
bMC338G21 |
CR938714.3 finished |
46 | DAMC-88G10 Hschr6_MHC_MCF_ctg1 |
bMC88G10 |
CR759815.3 finished |
47 | DAMC-118J7 Hschr6_MHC_MCF_ctg1 |
bMC118J7 |
CR933862.6 finished |
48 | DAMC-153L10 Hschr6_MHC_MCF_ctg1 |
bMC153L10 |
CR759828.5 finished |
GAP (type-2) length 99452 bps | |||
50 | DAMC-190B12 Hschr6_MHC_MCF_ctg1 |
bMC190B12 |
CR753864.4 finished |
51 | DAMC-81L12 Hschr6_MHC_MCF_ctg1 |
bMC81L12 |
CR942185.8 finished |
GAP (type-2) length 11423 bps | |||
53 | DAMC-157M7 Hschr6_MHC_MCF_ctg1 |
bMC157M7 |
CR759761.9 finished |
54 | DAMC-117B11 Hschr6_MHC_MCF_ctg1 |
bMC117B11 |
CR759787.4 finished |
GAP (type-2) length 34221 bps | |||
56 | DAMC-303C24 Hschr6_MHC_MCF_ctg1 |
bMC303C24 |
CR759784.6 finished |
57 | DAMC-178C20 Hschr6_MHC_MCF_ctg1 |
bMC178C20 |
CR759782.7 finished |
GAP (type-2) length 25852 bps | |||
59 | DAMC-258G8 Hschr6_MHC_MCF_ctg1 |
bMC258G8 |
CR936924.2 finished |
60 | DAMC-407K20 Hschr6_MHC_MCF_ctg1 |
bMC407K20 |
CR936882.4 finished |
61 | DAMC-284F20 Hschr6_MHC_MCF_ctg1 |
bMC284F20 |
CR759792.3 finished |
62 | DAMC-327B5 Hschr6_MHC_MCF_ctg1 |
bMC327B5 |
CR925796.6 finished |
63 | DAMC-108L3 Hschr6_MHC_MCF_ctg1 |
bMC108L3 |
CR933878.7 finished |
64 | DAMC-278C20 Hschr6_MHC_MCF_ctg1 |
bMC278C20 |
CR938720.8 finished |
GAP (type-2) length 56338 bps | |||
66 | DAMC-185H11 Hschr6_MHC_MCF_ctg1 |
bMC185H11 |
CR759773.4 finished |
67 | DAMC-16P5 Hschr6_MHC_MCF_ctg1 |
bMC16P5 |
CR759779.6 finished |
68 | DAMC-146E17 Hschr6_MHC_MCF_ctg1 |
bMC146E17 |
CR788250.6 finished |
GAP (type-2) length 30555 bps | |||
70 | DAMC-134I7 Hschr6_MHC_MCF_ctg1 |
bMC134I7 |
CR933859.5 finished |
71 | DAMC-176M21 Hschr6_MHC_MCF_ctg1 |
bMC176M21 |
CR759848.2 finished |
72 | DAMC-27I8 Hschr6_MHC_MCF_ctg1 |
bMC27I8 |
CT009502.2 finished |
GAP (type-2) length 47 bps | |||
74 | DAMC-219D2 Hschr6_MHC_MCF_ctg1 |
bMC219D2 |
CR933844.2 finished |
75 | DAMC-226H3 Hschr6_MHC_MCF_ctg1 |
bMC226H3 |
CR759798.3 finished |
GAP (type-2) length 17921 bps | |||
77 | DAMC-206D4 Hschr6_MHC_MCF_ctg1 |
bMC206D4 |
CR759795.4 finished |
GAP (type-2) length 172081 bps | |||
79 | DAMC-269O2 Hschr6_MHC_MCF_ctg1 |
bMC269O2 |
CR936877.4 finished |
80 | DAMC-227D19 Hschr6_MHC_MCF_ctg1 |
bMC227D19 |
CR759786.5 finished |
81 | DAMC-283P18 Hschr6_MHC_MCF_ctg1 |
bMC283P18 |
CR759793.3 finished |
AGP
Details
Component Sanger::HumPub::ChromoView failed to execute
Statistics
Clone Summary
- Number of gaps
- 22
- Gap types
- type-2
- 22
- Total clones
- 59
- Clone HTGS Phases
- finished
- 59
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 110,326
- Total finished length of fin clones w/ overlap
- 3,907,400
- Total finished length of fin clones w/o overlap
- 3,797,074
- Total overlap length of fin+unfin clones
- 110,326
- Total finished length of fin+unfin clones w/ overlap
- 3,907,400
- Total finished length of fin+unfin clones w/o overlap
- 3,797,074
Dovetails
# | rank | accession | status | length | date |
---|---|---|---|---|---|
1 | 1 | AL662890 | unfinished | 2,148 | Tue, 16 Jan 2018 00:11 |
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