ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_4__19 (TPF updated: 2015-03-27)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
Hschr19LRC_LRC_j_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
2
Hschr19LRC_LRC_j_ctg3_1
CONTAINED
KF511280
KF511280.1
finished
1 CTD-3093M3
Hschr19LRC_LRC_j_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
  GAP (type-2) length 612000 bps    
4 XX-FLRC_B001C2
Hschr19LRC_LRC_j_ctg3_1
FLRC_B001C2
CU466259.1
finished
5 XX-FLRC_B001F3
Hschr19LRC_LRC_j_ctg3_1
FLRC_B001F3
CU041340.3
finished
6 XX-FLRC_B001F9
Hschr19LRC_LRC_j_ctg3_1
FLRC_B001F9
CU633846.3
finished
  GAP (type-2) length 44000 bps    
8 CTC-550B14
Hschr19LRC_LRC_j_ctg3_1
bK550B14
AC011476.8
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137190 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 1 137190 +
137191 137602 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 KF511280.1 1 412 +
137603 198018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 137602 198017 +
198019 810018 4 N 612000 contig yes # ALIGN GENUS
810019 848995 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU466259.1 1 38977 +
848996 851714 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU041340.3 35291 38009 +
851715 863163 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU633846.3 1 11449 -
863164 907163 8 N 44000 contig yes # ALIGN GENUS
907164 1094227 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC011476.8 1 187064 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
65,750
Total finished length of fin clones w/ overlap
503,977
Total finished length of fin clones w/o overlap
438,227
Total overlap length of fin+unfin clones
65,750
Total finished length of fin+unfin clones w/ overlap
503,977
Total finished length of fin+unfin clones w/o overlap
438,227

Dovetails

# rank accession status length date
1 1 AC012314.8 unfinished 60,416 Thu, 26 Mar 2015 23:26

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