ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_4__19 (TPF updated: 2014-10-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
Hschr19LRC_LRC_j_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
2
Hschr19LRC_LRC_j_ctg3_1
CONTAINED
KF511280
KF511280.1
finished
1 CTD-3093M3
Hschr19LRC_LRC_j_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
  GAP (type-2) length 612000 bps    
4 XX-FLRC_B001C2
Hschr19LRC_LRC_j_ctg3_1
Cl/Pr FLRC_B001C2/fLRC_B001C2 swap
EPN details
CU466259.1
finished
5 XX-FLRC_B001F3
Hschr19LRC_LRC_j_ctg3_1
Cl/Pr FLRC_B001F3/fLRC_B001F3 swap
EPN details
CU041340.3
finished
6 XX-FLRC_B001F9
Hschr19LRC_LRC_j_ctg3_1
Cl/Pr FLRC_B001F9/fLRC_B001F9 swap
EPN details
CU633846.3
finished
  GAP (type-2) length 44000 bps    
8 CTC-550B14
Hschr19LRC_LRC_j_ctg3_1
bK550B14
AC011476.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137190 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 1 137190 +
137191 137602 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 KF511280.1 1 412 +
137603 198018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 137602 198017 +
198019 810018 4 N 612000 contig yes # ALIGN GENUS
810019 848995 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU466259.1 1 38977 +
848996 851714 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU041340.3 35291 38009 +
851715 863163 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU633846.3 1 11449 -
863164 907163 8 N 44000 contig yes # ALIGN GENUS
907164 1094227 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC011476.8 1 187064 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTD-3093M3
Hschr19LRC_LRC_j_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2 3' / 5'
137190 / 1
60416 / -
412
0.24
Identified
2014-10-23
fetch_ncbi...
humpub
 
2
Hschr19LRC_LRC_j_ctg3_1
CONTAINED
KF511280
-
-
KF511280.1
finished
412 - 3' / 5'
412 / 137602
- / 137190
412
0.24
Identified
2014-10-23
fetch_ncbi...
humpub
 
1 CTD-3093M3
Hschr19LRC_LRC_j_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2        
  GAP (type-2) length 612000 bps                  
4 XX-FLRC_B001C2
Hschr19LRC_LRC_j_ctg3_1
Cl/Pr FLRC_B001C2/fLRC_B001C2 swap
EPN details
Submitted to EMBL
12-JAN-09
CU466259.1
finished
38977 - 3' / 5'
38977 / 35291
- / -
35290
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
5 XX-FLRC_B001F3
Hschr19LRC_LRC_j_ctg3_1
Cl/Pr FLRC_B001F3/fLRC_B001F3 swap
EPN details
Submitted to EMBL
12-JAN-09
CU041340.3
finished
38009 - 3' / 3'
38009 / 11449
- / -
30049
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
6 XX-FLRC_B001F9
Hschr19LRC_LRC_j_ctg3_1
Cl/Pr FLRC_B001F9/fLRC_B001F9 swap
EPN details
Submitted to EMBL
07-MAY-08
CU633846.3
finished
41498 -        
  GAP (type-2) length 44000 bps                  
8 CTC-550B14
Hschr19LRC_LRC_j_ctg3_1
bK550B14
-
-
AC011476.8
finished
187064 CIT-HSP-C        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
65,750
Total finished length of fin clones w/ overlap
503,977
Total finished length of fin clones w/o overlap
438,227
Total overlap length of fin+unfin clones
65,750
Total finished length of fin+unfin clones w/ overlap
503,977
Total finished length of fin+unfin clones w/o overlap
438,227

Dovetails

# rank accession status length date
1 1 AC012314.8 unfinished 60,416 Wed, 22 Oct 2014 23:38

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/bse1hgbz