ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_3__19 (TPF updated: 2014-04-17)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
Hschr19LRC_LRC_i_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
2
Hschr19LRC_LRC_i_ctg3_1
CONTAINED
KF511280
KF511280.1
finished
1 CTD-3093M3
Hschr19LRC_LRC_i_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
  GAP (type-2) length 525000 bps    
4 XX-FLRC_B001E2
Hschr19LRC_LRC_i_ctg3_1
Cl/Pr FLRC_B001E2/fLRC_B001E2 swap
EPN details
CU464060.5
finished
  GAP (type-2) length 50000 bps    
6 XX-FLRC_B001F2
Hschr19LRC_LRC_i_ctg3_1
Cl/Pr FLRC_B001F2/fLRC_B001F2 swap
EPN details
CU464062.2
finished
  GAP (type-2) length 32000 bps    
8 CTC-550B14
Hschr19LRC_LRC_i_ctg3_1
bK550B14
AC011476.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137190 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 1 137190 +
137191 137602 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 KF511280.1 1 412 +
137603 198018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 137602 198017 +
198019 723018 4 N 525000 contig yes # ALIGN GENUS
723019 764000 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CU464060.5 1 40982 +
764001 814000 6 N 50000 contig yes # ALIGN GENUS
814001 847626 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 CU464062.2 1 33626 +
847627 879626 8 N 32000 contig yes # ALIGN GENUS
879627 1066690 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC011476.8 1 187064 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTD-3093M3
Hschr19LRC_LRC_i_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2 3' / 5'
137190 / 1
60416 / -
412
0.24
Identified
2014-04-09
fetch_ncbi...
humpub
 
2
Hschr19LRC_LRC_i_ctg3_1
CONTAINED
KF511280
-
-
KF511280.1
finished
412 - 3' / 5'
412 / 137602
- / 137190
412
0.24
Identified
2014-04-09
fetch_ncbi...
humpub
 
1 CTD-3093M3
Hschr19LRC_LRC_i_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2        
  GAP (type-2) length 525000 bps                  
4 XX-FLRC_B001E2
Hschr19LRC_LRC_i_ctg3_1
Cl/Pr FLRC_B001E2/fLRC_B001E2 swap
EPN details
Analysed
01-FEB-13
CU464060.5
finished
40982 -        
  GAP (type-2) length 50000 bps                  
6 XX-FLRC_B001F2
Hschr19LRC_LRC_i_ctg3_1
Cl/Pr FLRC_B001F2/fLRC_B001F2 swap
EPN details
Analysed
01-FEB-13
CU464062.2
finished
33626 -        
  GAP (type-2) length 32000 bps                  
8 CTC-550B14
Hschr19LRC_LRC_i_ctg3_1
bK550B14
-
-
AC011476.8
finished
187064 CIT-HSP-C        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-2
3
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
411
Total finished length of fin clones w/ overlap
460,101
Total finished length of fin clones w/o overlap
459,690
Total overlap length of fin+unfin clones
411
Total finished length of fin+unfin clones w/ overlap
460,101
Total finished length of fin+unfin clones w/o overlap
459,690

Dovetails

# rank accession status length date
1 1 AC012314.8 unfinished 60,416 Sat, 19 Apr 2014 23:28

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