ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_3__6 (TPF updated: 2015-09-04)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH501-308K3
Hschr6_MHC_DBB_ctg1
bPG308K3
AL662890.3
finished
2 DADB-269D10
Hschr6_MHC_DBB_ctg1
bDB269D10
CR753905.3
finished
3 DADB-91F17
Hschr6_MHC_DBB_ctg1
bDB91F17
CR753651.10
finished
  GAP (type-2) length 107905 bps    
5 DADB-29N8
Hschr6_MHC_DBB_ctg1
bDB29N8
CR759835.5
finished
6 DADB-35C7
Hschr6_MHC_DBB_ctg1
bDB35C7
CR759827.2
finished
7 DADB-143G1
Hschr6_MHC_DBB_ctg1
bDB143G1
CR388407.3
finished
8 DADB-150K7
Hschr6_MHC_DBB_ctg1
bDB150K7
CR388415.2
finished
9 DADB-97P1
Hschr6_MHC_DBB_ctg1
bDB97P1
CR933537.3
finished
10 DADB-246O10
Hschr6_MHC_DBB_ctg1
bDB246O10
CR753509.3
finished
  GAP (type-2) length 17923 bps    
12 DADB-136A24
Hschr6_MHC_DBB_ctg1
bDB136A24
CR388393.8
finished
13 DADB-115L1
Hschr6_MHC_DBB_ctg1
bDB115L1
CR759770.3
finished
14 DADB-225M10
Hschr6_MHC_DBB_ctg1
bDB225M10
CR759870.6
finished
15 DADB-25P22
Hschr6_MHC_DBB_ctg1
bDB25P22
CR388408.5
finished
16 DADB-68M4
Hschr6_MHC_DBB_ctg1
bDB68M4
CR753818.5
finished
17 DADB-15K14
Hschr6_MHC_DBB_ctg1
bDB15K14
CR759769.4
finished
18 DADB-123D8
Hschr6_MHC_DBB_ctg1
bDB123D8
CR388220.8
finished
19 DADB-60O11
Hschr6_MHC_DBB_ctg1
bDB60O11
CR388205.7
finished
20 DADB-161G24
Hschr6_MHC_DBB_ctg1
bDB161G24
CR933538.3
finished
  GAP (type-2) length 6258 bps    
22 DADB-28I23
Hschr6_MHC_DBB_ctg1
bDB28I23
CR753815.3
finished
23 DADB-263K7
Hschr6_MHC_DBB_ctg1
bDB263K7
CT009499.2
finished
24 DADB-23P23
Hschr6_MHC_DBB_ctg1
bDB23P23
CR388382.5
finished
25 DADB-50B12
Hschr6_MHC_DBB_ctg1
bDB50B12
CR759281.4
finished
26 DADB-148B19
Hschr6_MHC_DBB_ctg1
bDB148B19
CR812479.6
finished
27 DADB-50G20
Hschr6_MHC_DBB_ctg1
bDB50G20
CR762481.6
finished
28 DADB-87H23
Hschr6_MHC_DBB_ctg1
bDB87H23
CR388372.6
finished
  GAP (type-2) length 510 bps    
30 DADB-129D20
Hschr6_MHC_DBB_ctg1
bDB129D20
CR753328.11
finished
31 DADB-118P11
Hschr6_MHC_DBB_ctg1
bDB118P11
CR936878.10
finished
32 DADB-91G1
Hschr6_MHC_DBB_ctg1
bDB91G1
CR388215.10
finished
  GAP (type-2) length 2518 bps    
34 DADB-32E8
Hschr6_MHC_DBB_ctg1
bDB32E8
CR753093.2
finished
35 DADB-160J14
Hschr6_MHC_DBB_ctg1
bDB160J14
CR759747.7
finished
36 DADB-333N9
Hschr6_MHC_DBB_ctg1
bDB333N9
CR762495.5
finished
37 DADB-72G6
Hschr6_MHC_DBB_ctg1
bDB72G6
CR753812.3
finished
38 DADB-349N3
Hschr6_MHC_DBB_ctg1
bDB349N3
CR847993.4
finished
39 DADB-141O4
Hschr6_MHC_DBB_ctg1
bDB141O4
CR753819.5
finished
40 DADB-104B20
Hschr6_MHC_DBB_ctg1
bDB104B20
CR388229.14
finished
41 DADB-15N24
Hschr6_MHC_DBB_ctg1
bDB15N24
CR759814.6
finished
  GAP (type-2) length 117358 bps    
43 DADB-26I14
Hschr6_MHC_DBB_ctg1
bDB26I14
CR753820.15
finished
44 DADB-70P7
Hschr6_MHC_DBB_ctg1
bDB70P7
CR753892.5
finished
45 DADB-127H9
Hschr6_MHC_DBB_ctg1
bDB127H9
CR753842.3
finished
46 DADB-110M10
Hschr6_MHC_DBB_ctg1
bDB110M10
CR936239.2
finished
47 DADB-149K5
Hschr6_MHC_DBB_ctg1
bDB149K5
CR925765.2
finished
48 DADB-333F21
Hschr6_MHC_DBB_ctg1
bDB333F21
CR388202.9
finished
49 DADB-122G4
Hschr6_MHC_DBB_ctg1
bDB122G4
CR388219.12
finished
50 DADB-112B14
Hschr6_MHC_DBB_ctg1
bDB112B14
CR753845.11
finished
51 DADB-220I18
Hschr6_MHC_DBB_ctg1
bDB220I18
CR753803.4
finished
  GAP (type-2) length 74304 bps    
53 DADB-285H20
Hschr6_MHC_DBB_ctg1
bDB285H20
CR759737.4
finished
54 DADB-341G19
Hschr6_MHC_DBB_ctg1
bDB341G19
CR751604.3
finished
55 DADB-254M3
Hschr6_MHC_DBB_ctg1
bDB254M3
CR752644.6
finished
56 XX-BDB254M3_BDB70I23
Hschr6_MHC_DBB_ctg1
BDB254M3_BDB70I23
CU019529.1
finished
57 DADB-70I23
Hschr6_MHC_DBB_ctg1
bDB70I23
CR753634.3
finished
58 DADB-165L10
Hschr6_MHC_DBB_ctg1
bDB165L10
CR759837.3
finished
  GAP (type-2) length 36228 bps    
60 DADB-102D7
Hschr6_MHC_DBB_ctg1
bDB102D7
CR753841.3
finished
61 DADB-102D14
Hschr6_MHC_DBB_ctg1
bDB102D14
CR753309.2
finished
62 DADB-249P12
Hschr6_MHC_DBB_ctg1
bDB249P12
CR753846.4
finished
63 DADB-156N11
Hschr6_MHC_DBB_ctg1
bDB156N11
CR788227.4
finished
64 DADB-78A10
Hschr6_MHC_DBB_ctg1
bDB78A10
CR753889.4
finished
65 DADB-223G19
Hschr6_MHC_DBB_ctg1
bDB223G19
CR752645.3
finished
  GAP (type-2) length 20422 bps    
67 DADB-17J1
Hschr6_MHC_DBB_ctg1
bDB17J1
CR759829.6
finished
68 DADB-22N23
Hschr6_MHC_DBB_ctg1
bDB22N23
CR762479.5
finished
  GAP (type-2) length 22668 bps    
70 DADB-100D22
Hschr6_MHC_DBB_ctg1
bDB100D22
CR759733.4
finished
71 DADB-91M20
Hschr6_MHC_DBB_ctg1
bDB91M20
CR762434.7
finished
72 DADB-159G18
Hschr6_MHC_DBB_ctg1
bDB159G18
CR759817.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 13289 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL662890.3 1 13289 +
13290 15591 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR753905.3 1 2302 +
15592 138055 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR753651.10 2001 124464 +
138056 245960 4 N 107905 contig yes # ALIGN GENUS
245961 321358 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 CR759835.5 1 75398 +
321359 323706 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 CR759827.2 2001 4348 +
323707 364290 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 CR388407.3 2001 42584 +
364291 464486 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 CR388415.2 2001 102196 +
464487 496917 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 CR933537.3 2001 34431 +
496918 622457 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 CR753509.3 2001 127540 +
622458 640380 11 N 17923 contig yes # ALIGN GENUS
640381 799746 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 20 CR388393.8 1 159366 +
799747 850296 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 20 CR759770.3 2001 52550 +
850297 906039 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 20 CR759870.6 2001 57743 +
906040 983364 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 20 CR388408.5 2001 79325 +
983365 1019197 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 20 CR753818.5 2001 37833 +
1019198 1105609 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 20 CR759769.4 2001 88412 +
1105610 1234976 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 20 CR388220.8 2002 131368 +
1234977 1336019 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 20 CR388205.7 428 101470 +
1336020 1337861 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 20 CR933538.3 2001 3842 +
1337862 1344119 21 N 6258 contig yes # ALIGN GENUS
1344120 1423051 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 28 CR753815.3 1 78932 +
1423052 1424634 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 28 CT009499.2 2001 3583 +
1424635 1531701 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 28 CR388382.5 2001 109067 +
1531702 1636721 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 28 CR759281.4 2001 107020 +
1636722 1699825 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 28 CR812479.6 2001 65104 +
1699826 1768242 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 28 CR762481.6 2001 70417 +
1768243 1836690 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 28 CR388372.6 2001 70448 +
1836691 1837200 29 N 510 contig yes # ALIGN GENUS
1837201 1942335 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 CR753328.11 1 105135 +
1942336 2006551 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 CR936878.10 2001 66216 +
2006552 2117295 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 CR388215.10 2001 112744 +
2117296 2119813 33 N 2518 contig yes # ALIGN GENUS
2119814 2148085 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 41 CR753093.2 1 28272 +
2148086 2260968 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 41 CR759747.7 2001 114883 +
2260969 2294264 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 41 CR762495.5 2001 35296 +
2294265 2326757 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 41 CR753812.3 2001 34493 +
2326758 2345681 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 41 CR847993.4 2001 20924 +
2345682 2425099 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 41 CR753819.5 2001 81418 +
2425100 2544758 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 41 CR388229.14 2001 121659 +
2544759 2606257 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 41 CR759814.6 2001 63499 +
2606258 2723615 42 N 117358 contig yes # ALIGN GENUS
2723616 2798466 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 51 CR753820.15 1 74851 +
2798467 2897888 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 51 CR753892.5 2001 101422 +
2897889 2964901 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 51 CR753842.3 2001 69013 +
2964902 3006282 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 51 CR936239.2 2001 43381 +
3006283 3062279 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 51 CR925765.2 2001 57997 +
3062280 3140643 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 51 CR388202.9 2001 80364 +
3140644 3210233 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 51 CR388219.12 2001 71590 +
3210234 3304323 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 51 CR753845.11 2001 96090 +
3304324 3407000 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 51 CR753803.4 2001 104677 +
3407001 3481304 52 N 74304 contig yes # ALIGN GENUS
3481305 3564829 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 58 CR759737.4 1 83525 +
3564830 3582265 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 58 CR751604.3 2001 19436 +
3582266 3647396 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 58 CR752644.6 2001 67131 +
3647397 3648237 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 58 CU019529.1 213 1053 +
3648238 3726584 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 58 CR753634.3 126 78472 +
3726585 3736386 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 58 CR759837.3 2001 11802 +
3736387 3772614 59 N 36228 contig yes # ALIGN GENUS
3772615 3780419 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 65 CR753841.3 1 7805 +
3780420 3886317 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 65 CR753309.2 2001 107898 +
3886318 4012366 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 65 CR753846.4 2001 128049 +
4012367 4067440 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 65 CR788227.4 2001 57074 +
4067441 4112986 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 65 CR753889.4 2001 47546 +
4112987 4206542 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 65 CR752645.3 2001 95556 +
4206543 4226964 66 N 20422 contig yes # ALIGN GENUS
4226965 4320256 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 68 CR759829.6 1 93292 +
4320257 4354126 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 68 CR762479.5 2001 35870 +
4354127 4376794 69 N 22668 contig yes # ALIGN GENUS
4376795 4480999 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CR759733.4 1 104205 +
4481000 4503494 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CR762434.7 2001 24495 +
4503495 4610396 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 72 CR759817.3 2001 108902 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
10
Gap types
type-2
10
Total clones
62
Clone HTGS Phases
finished
62
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
97,066
Total finished length of fin clones w/ overlap
4,423,066
Total finished length of fin clones w/o overlap
4,326,000
Total overlap length of fin+unfin clones
97,066
Total finished length of fin+unfin clones w/ overlap
4,423,066
Total finished length of fin+unfin clones w/o overlap
4,326,000

Dovetails

# rank accession status length date
1 1 AL662890.3 unfinished 121,696 Fri, 04 Sep 2015 23:59

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Other links

* quick link - http://q.sanger.ac.uk/43xrza9m